RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120203", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26785435 26785435 PRJNA1120203_P_NODE_83501_length_249_cov_0.875000_g82485_i0 PRJNA1120203 83501 249 0.875 2.17875 Minisyncoccota bacterium 2053589 Bacteria Bacteria 127 2.2499999999999995e-32   NR MFA6270462.1 2053589 g82485 i0 74.4 0.987951807228916 82 21 98.8 0 3 248 192 273 MFA6270462.1 glycosyltransferase [Candidatus Paceibacterota bacterium] diamond 246 127 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27986051 27986051 PRJNA1120203_P_NODE_97325_length_244_cov_0.900585_g96309_i0 PRJNA1120203 97325 244 0.900585 2.1974274 Minisyncoccota bacterium 2053589 Bacteria Bacteria 136 4.849999999999998e-35   NR MDD4804556.1 2053589 g96309 i0 80 0.983606557377049 80 16 98.4 0 3 242 520 599 MDD4804556.1 DNA polymerase III subunit alpha [Candidatus Paceibacterota bacterium] diamond 240 136 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28680851 28680851 PRJNA1120203_P_NODE_60587_length_289_cov_1.208333_g59571_i0 PRJNA1120203 60587 289 1.208333 3.49208237 Minisyncoccota bacterium 2053589 Bacteria Bacteria 57.8 1.66e-8   NR MDD5068884.1 2053589 g59571 i0 45.9 0.633217993079585 61 32 62.3 1 2 181 29 89 MDD5068884.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 183 57.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;