RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1120203", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Bipolaricaulota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Bipolaricaulota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1120203 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28428192 28428192 PRJNA1120203_P_NODE_87206_length_248_cov_0.880000_g86190_i0 PRJNA1120203 87206 248 0.88 2.1824 Candidatus Bipolaricaulota bacterium 2306012 Bacteria Bacteria 53.9 4.33e-6   NR MBN1858227.1 2306012 g86190 i0 65.1 0.520161290322581 43 15 52 0 248 120 329 371 MBN1858227.1 isocitrate/isopropylmalate dehydrogenase family protein [Candidatus Bipolaricaulota bacterium] diamond 129 53.9 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium
30449435 30449435 PRJNA1120203_P_NODE_81073_length_250_cov_0.870056_g80057_i0 PRJNA1120203 81073 250 0.870056 2.17514 Candidatus Acetothermia bacterium 2053493 Bacteria Bacteria 104 1.7599999999999998e-24   NR MCR4405141.1 2053493 g80057 i0 57.8 0.996 83 35 99.6 0 2 250 155 237 MCR4405141.1 methionine adenosyltransferase [Candidatus Acetothermia bacterium] diamond 249 104 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Acetothermia bacterium
31523944 31523944 PRJNA1120203_P_NODE_91416_length_246_cov_0.890173_g90400_i0 PRJNA1120203 91416 246 0.890173 2.18982558 Candidatus Acetothermia bacterium 2053493 Bacteria Bacteria 103 1.4e-25   NR MBI1741880.1 2053493 g90400 i0 64.6 1 82 28 98.8 1 243 1 118 199 MBI1741880.1 recombinase family protein [Candidatus Acetothermia bacterium] diamond 246 103 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Acetothermia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;