RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1120060" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27512184 27512184 PRJNA1120060_P_NODE_397163_length_389_cov_4.924051_g379747_i0 PRJNA1120060 397163 389 4.924051 19.15455839 Nitrospinales bacterium 2833568 Bacteria Bacteria 63.9 7.62e-9   NR MCH2389497.1 2833568 g379747 i0 41.7 1.69665809768638 72 39 54.8 2 10 222 614 683 MCH2389497.1 reverse transcriptase family protein [Nitrospinales bacterium] diamond 660 63.9 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales     Nitrospinales bacterium
27701409 27701409 PRJNA1120060_P_NODE_2805544_length_246_cov_0.901734_g2787458_i0 PRJNA1120060 2805544 246 0.901734 2.21826564 Nitrospinota bacterium 2026769 Bacteria Bacteria 40 0.0408   NR MEE8483666.1 2026769 g2787458 i0 44.2 0.524390243902439 43 24 52.4 0 236 108 4 46 MEE8483666.1 hypothetical protein [Nitrospinota bacterium] diamond 129 40 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
28205081 28205081 PRJNA1120060_P_NODE_1257966_length_309_cov_2.461864_g1240025_i0 PRJNA1120060 1257966 309 2.461864 7.60715976 Nitrospinota bacterium 2026769 Bacteria Bacteria 42 0.0145   NR MDP7350429.1 2026769 g1240025 i0 44.1 0.330097087378641 34 19 33 0 22 123 17 50 MDP7350429.1 MgtC/SapB family protein [Nitrospinota bacterium] diamond 102 42 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
31492142 31492142 PRJNA1120060_P_NODE_656016_length_340_cov_1.056180_g638238_i0 PRJNA1120060 656016 340 1.05618 3.591012 Nitrospinota bacterium 2026769 Bacteria Bacteria 44.3 0.0318   NR MBI3329833.1 2026769 g638238 i0 47.5 0.352941176470588 40 21 35.3 0 156 37 520 559 MBI3329833.1 hypothetical protein [Nitrospinota bacterium] diamond 120 44.3 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
32377497 32377497 PRJNA1120060_P_NODE_3105779_length_236_cov_2.006135_g3087678_i0 PRJNA1120060 3105779 236 2.006135 4.7344786 Nitrospinota bacterium 2026769 Bacteria Bacteria 42.4 0.0478   NR MBI4388961.1 2026769 g3087678 i0 43.9 0.521186440677966 41 17 52.1 1 54 176 226 260 MBI4388961.1 ATP-binding protein [Nitrospinota bacterium] diamond 123 42.4 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
32629369 32629369 PRJNA1120060_P_NODE_2163820_length_266_cov_2.632124_g2145771_i0 PRJNA1120060 2163820 266 2.632124 7.00144984 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 41.6 0.0368   NR NIQ04110.1 2358456 g2145771 i0 36.9 0.733082706766917 65 40 73.3 1 249 55 28 91 NIQ04110.1 phosphatidylserine decarboxylase family protein [Nitrospinaceae bacterium] diamond 195 41.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;