RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120060" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5355252 5355252 PRJNA1120060_P_NODE_2472565_length_255_cov_1.291209_g2454495_i0 PRJNA1120060 2472565 255 1.291209 3.29258295 Ampelovirus univitis 3426351 Viruses Viruses 52.8 0.023   NTclustered gi|2730546987|dbj|LC815109.1| 47985 g2454495 i0 100 2.19607843137255 28 0 11 0 189 216 1332 1359 Grapevine leafroll-associated virus 1 g8-C2609 RNA, nearly complete genome blastn 560 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae Ampelovirus Ampelovirus univitis
31649019 31649019 PRJNA1120060_P_NODE_2380457_length_258_cov_2.097297_g2362392_i0 PRJNA1120060 2380457 258 2.097297 5.41102626 Border disease virus 358764 Viruses Viruses 47.4 0.00103   NR AAA18909.1 358764 g2362392 i0 42.6 1.82558139534884 47 24 54.7 1 75 215 385 428 AAA18909.1 polyprotein; structural protein; glycoprotein, partial [Border disease virus] diamond 471 47.4 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus ovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;