RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120060" and tax_phylum = "Duplornaviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Duplornaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120060 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21934776 21934776 PRJNA1120060_P_NODE_2994758_length_241_cov_2.839286_g2976661_i0 PRJNA1120060 2994758 241 2.839286 6.84267926 Rotavirus alphagastroenteritidis 3432193 Viruses Viruses 52.8 0.022   NTclustered gi|1080113371|gb|KT878995.1| 28875 g2976661 i0 100 0.232365145228216 28 0 12 0 164 191 93 66 Rotavirus A strain RVA/alpaca-wt/PER/356/2010/G3P[14] segment 1, partial sequence blastn 56 52.8 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
24461099 24461099 PRJNA1120060_P_NODE_122860_length_537_cov_1.273707_g107629_i0 PRJNA1120060 122860 537 1.273707 6.83980659 Rotavirus tritogastroenteritidis 3432203 Viruses Viruses 54.7 0.015   NTclustered gi|1774723299|gb|MK953144.1| 36427 g107629 i0 94.286 0.0651769087523277 35 2 7 0 419 453 197 231 Rotavirus C strain RVC/Pig-wt/ESP/VC20B/2017/G6P[5] nonstructural RNA-binding protein 1 gene, complete cds blastn 35 54.7 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus tritogastroenteritidis
32787902 32787902 PRJNA1120060_P_NODE_678340_length_336_cov_4.197719_g660533_i0 PRJNA1120060 678340 336 4.197719 14.10433584 Poaceae Liege alphachrysovirus 2 2972876 Viruses Viruses 50.8 1.65e-4   NR UVG55906.1 2972876 g660533 i0 57.5 0.357142857142857 40 17 35.7 0 97 216 572 611 UVG55906.1 putative RNA-dependent RNA polymerase [Poaceae Liege alphachrysovirus 2] diamond 120 50.8 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Chrysoviridae Alphachrysovirus Poaceae Liege alphachrysovirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;