RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1120060" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4099947 4099947 PRJNA1120060_P_NODE_903924_length_312_cov_4.309623_g885995_i0 PRJNA1120060 903924 312 4.309623 13.44602376 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.008   NTclustered gi|470490156|ref|XM_004344911.1| 1257118 g885995 i0 100 0.092948717948718 29 0 9 0 37 65 3680 3652 Acanthamoeba castellanii str. Neff midasin family protein (ACA1_286600), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7887706 7887706 PRJNA1120060_P_NODE_1223307_length_310_cov_2.421941_g1205367_i0 PRJNA1120060 1223307 310 2.421941 7.5080171 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.029   NTclustered gi|470441883|ref|XM_004339418.1| 1257118 g1205367 i0 100 0.0903225806451613 28 0 9 0 261 288 706 733 Acanthamoeba castellanii str. Neff steroid isomerase (ACA1_061950), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10439640 10439640 PRJNA1120060_P_NODE_1318389_length_305_cov_1.698276_g1300432_i0 PRJNA1120060 1318389 305 1.698276 5.1797418 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 311 4.25e-80   NTclustered gi|470447963|ref|XM_004340066.1| 1257118 g1300432 i0 85.197 96.1573770491803 304 43 99 2 1 303 849 1151 Acanthamoeba castellanii str. Neff ATP synthase, putative (ACA1_367940), partial mRNA blastn 29328 311 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12994095 12994095 PRJNA1120060_P_NODE_1610091_length_288_cov_38.944186_g1592098_i0 PRJNA1120060 1610091 288 38.944186 112.15925568 Vannella simplex 197532 Discosea other_Eukaryota 481 2.869999999999999e-131   NTclustered gi|284192584|gb|GQ265382.1| 197532 g1592098 i0 97.203 98.75 286 4 99 2 3 288 399 680 Vannella simplex strain CCAP 1589/3 clone A134.3 18S ribosomal RNA gene, partial sequence blastn 28440 481 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
21921428 21921428 PRJNA1120060_P_NODE_1922618_length_276_cov_1.251232_g1904596_i0 PRJNA1120060 1922618 276 1.251232 3.45340032 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.025   NTclustered gi|470481104|ref|XM_004342495.1| 1257118 g1904596 i0 100 0.101449275362319 28 0 10 0 246 273 2333 2360 Acanthamoeba castellanii str. Neff proteasome activator subunit 4, putative (ACA1_185740), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28237862 28237862 PRJNA1120060_P_NODE_3130066_length_234_cov_5.428571_g3111962_i0 PRJNA1120060 3130066 234 5.428571 12.70285614 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 1.26e-5   NR XP_004368131.1 1257118 g3111962 i0 41.4 1.78205128205128 70 35 89.7 2 212 3 223 286 XP_004368131.1 zinc knuckle domain containing protein [Acanthamoeba castellanii str. Neff] diamond 417 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30259022 30259022 PRJNA1120060_P_NODE_2645072_length_250_cov_0.875706_g2626992_i0 PRJNA1120060 2645072 250 0.875706 2.189265 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.4 0.00472   NR XP_004368013.1 1257118 g2626992 i0 32 1.464 75 48 87.6 2 1 219 237 310 XP_004368013.1 ubiquitin carboxyl-terminal hydrolase [Acanthamoeba castellanii str. Neff] diamond 366 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30923294 30923294 PRJNA1120060_P_NODE_891994_length_312_cov_5.175732_g874066_i0 PRJNA1120060 891994 312 5.175732 16.14828384 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.2 1.43e-6   NR XP_004336149.1 1257118 g874066 i0 48.1 5.75961538461539 54 28 51.9 0 163 2 246 299 XP_004336149.1 integrase core domain containing protein [Acanthamoeba castellanii str. Neff] diamond 1797 56.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32082379 32082379 PRJNA1120060_P_NODE_518298_length_363_cov_2.289655_g500665_i0 PRJNA1120060 518298 363 2.289655 8.31144765 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.5 2.8e-11   NR AAQ16627.1 5755 g500665 i0 50 4.16528925619835 78 39 64.5 0 343 110 343 420 AAQ16627.1 ubiquitin-like protein Ublp94.4 [Acanthamoeba castellanii] diamond 1512 70.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32249999 32249999 PRJNA1120060_P_NODE_1354218_length_301_cov_2.127193_g1336246_i0 PRJNA1120060 1354218 301 2.127193 6.40285093 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 3.37e-4   NR XP_004368131.1 1257118 g1336246 i0 33.3 2.50166112956811 84 50 83.7 2 257 6 215 292 XP_004368131.1 zinc knuckle domain containing protein [Acanthamoeba castellanii str. Neff] diamond 753 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;