RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1120060" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120060 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18879107 18879107 PRJNA1120060_P_NODE_976015_length_312_cov_2.824268_g958086_i0 PRJNA1120060 976015 312 2.824268 8.81171616 FCB group 1783270 Bacteria Bacteria 113 1.32e-20   NTclustered gi|1070918267|gb|CP017305.1| 274537 g958086 i0 84.034 25.5288461538462 119 17 38 2 193 310 2716114 2715997 Chlorobaculum limnaeum strain DSM 1677 chromosome, complete genome blastn 7965 113 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum limnaeum
23194145 23194145 PRJNA1120060_P_NODE_1719619_length_284_cov_2.061611_g1701613_i0 PRJNA1120060 1719619 284 2.061611 5.85497524 Chlorobiota bacterium 2268192 Bacteria Bacteria 52.8 0.026   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g1701613 i0 100 0.0985915492957746 28 0 10 0 32 59 158280 158253 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
26657195 26657195 PRJNA1120060_P_NODE_2352221_length_259_cov_2.220430_g2334160_i0 PRJNA1120060 2352221 259 2.22043 5.7509137 Pelodictyon phaeoclathratiforme 34090 Bacteria Bacteria 45.4 0.00484   NR WP_012509472.1 34090 g2334160 i0 48.8 0.474903474903475 41 19 45.2 1 142 258 248 288 WP_012509472.1 MBL fold metallo-hydrolase [Pelodictyon phaeoclathratiforme] diamond 123 45.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme
27796380 27796380 PRJNA1120060_P_NODE_3395644_length_216_cov_8.314685_g3377524_i0 PRJNA1120060 3395644 216 8.314685 17.9597196 Chlorobium sp. 1095 Bacteria Bacteria 42.7 0.0256   NR WP_331561693.1 1095 g3377524 i0 40.7 0.75 54 30 75 1 191 30 91 142 WP_331561693.1 rhodanese-like domain-containing protein [Chlorobium sp.] diamond 162 42.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
29057899 29057899 PRJNA1120060_P_NODE_1319908_length_305_cov_0.922414_g1301951_i0 PRJNA1120060 1319908 305 0.922414 2.8133627 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 43.5 0.0418   NR NTU57465.1 2067991 g1301951 i0 31.6 0.963934426229508 98 56 85.6 3 277 17 646 743 NTU57465.1 BamA/TamA family outer membrane protein [Chlorobiaceae bacterium] diamond 294 43.5 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
32281802 32281802 PRJNA1120060_P_NODE_1755439_length_282_cov_7.129187_g1737429_i0 PRJNA1120060 1755439 282 7.129187 20.10430734 Chlorobium sp. 1095 Bacteria Bacteria 140 2.86e-36   NR MBV5330742.1 1095 g1737429 i0 75.8 2.02127659574468 95 22 100 1 282 1 363 457 MBV5330742.1 glycosyltransferase [Chlorobium sp.] diamond 570 140 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32345636 32345636 PRJNA1120060_P_NODE_2507139_length_253_cov_4.288889_g2489067_i0 PRJNA1120060 2507139 253 4.288889 10.85088917 Chlorobiota bacterium 2268192 Bacteria Bacteria 46.2 0.0025   NR MDB5033862.1 2268192 g2489067 i0 35.9 0.758893280632411 64 41 75.9 0 208 17 228 291 MDB5033862.1 amino acid permease-associated region [Chlorobiota bacterium] diamond 192 46.2 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;