RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120060", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120060 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26816218 26816218 PRJNA1120060_P_NODE_2789881_length_246_cov_2.173410_g2771795_i0 PRJNA1120060 2789881 246 2.17341 5.3465886 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00624   NR CEO98809.1 37360 g2771795 i0 25.7 0.902439024390244 74 55 90.2 0 237 16 911 984 CEO98809.1 hypothetical protein PBRA_006922 [Plasmodiophora brassicae] diamond 222 45.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30226639 30226639 PRJNA1120060_P_NODE_2012312_length_272_cov_2.296482_g1994279_i0 PRJNA1120060 2012312 272 2.296482 6.24643104 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 159 3.2e-43   NR CEO97608.1 37360 g1994279 i0 82 0.981617647058823 89 16 98.2 0 3 269 316 404 CEO97608.1 hypothetical protein PBRA_000952 [Plasmodiophora brassicae] diamond 267 159 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30322082 30322082 PRJNA1120060_P_NODE_2006672_length_272_cov_3.271357_g1988639_i0 PRJNA1120060 2006672 272 3.271357 8.89809104 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 47 0.00159   NR CEO99397.1 37360 g1988639 i0 46 5.73529411764706 50 27 55.1 0 4 153 222 271 CEO99397.1 hypothetical protein PBRA_001303 [Plasmodiophora brassicae] diamond 1560 47.4 0.991561181434599 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;