RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120060", tax_clade = "SAR86 cluster" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 2 ✖

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4083261 4083261 PRJNA1120060_P_NODE_2842404_length_245_cov_1.343023_g2824318_i0 PRJNA1120060 2842404 245 1.343023 3.29040635 uncultured SAR86 cluster bacterium 648174 Bacteria Bacteria 54.7 0.006   NTclustered gi|2308952804|emb|OX044367.1| 648174 g2824318 i0 100 0.118367346938776 29 0 12 0 158 186 1285185 1285213 MAG: uncultured SAR86 cluster bacterium isolate A_MB256 genome assembly, chromosome: A_MB256_contig-1 blastn 29 54.7 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       uncultured SAR86 cluster bacterium
14269364 14269364 PRJNA1120060_P_NODE_1605072_length_289_cov_1.337963_g1587079_i0 PRJNA1120060 1605072 289 1.337963 3.86671307 SAR86 cluster bacterium 2030880 Bacteria Bacteria 56.5 0.002   NTclustered gi|2252311810|gb|CP097969.1| 2030880 g1587079 i0 97.059 0.117647058823529 34 0 12 1 235 268 1572504 1572472 SAR86 cluster bacterium isolate SAR86-D19 chromosome, complete genome blastn 34 56.5 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;