RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1120060" and tax_clade = "Pithoviruses"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Pithoviruses · 3 ✖

bioproject 1

  • PRJNA1120060 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24483322 24483322 PRJNA1120060_P_NODE_2927280_length_243_cov_1.270588_g2909187_i0 PRJNA1120060 2927280 243 1.270588 3.08752884 Pithovirus LCPAC102 2506587 Viruses Viruses 52.8 0.022   NTclustered gi|1588063662|gb|MK500468.1| 2506587 g2909187 i0 94.286 0.1440329218107 35 1 14 1 205 239 11189 11156 MAG: Pithovirus LCPAC102 genomic sequence blastn 35 52.8 1 Viruses Pithoviruses             Pithovirus LCPAC102
27449145 27449145 PRJNA1120060_P_NODE_369743_length_397_cov_2.114198_g352411_i0 PRJNA1120060 369743 397 2.114198 8.39336606 Pithovirus LCPAC4 2506597 Viruses Viruses 72.4 1.24e-13   NR QBK93616.1 2506597 g352411 i0 49.4 1.21662468513854 83 42 62.7 0 396 148 2 84 QBK93616.1 MAG: ubiquitin [Pithovirus LCPAC404] diamond 483 72.4 1 Viruses Pithoviruses             Pithovirus LCPAC404
32817821 32817821 PRJNA1120060_P_NODE_122020_length_538_cov_1.630108_g106808_i0 PRJNA1120060 122020 538 1.630108 8.76998104 Pithovirus LCPAC4 2506597 Viruses Viruses 62 4.6e-9   NR QBK93616.1 2506597 g106808 i0 43.2 0.87546468401487 81 46 45.2 0 292 534 2 82 QBK93616.1 MAG: ubiquitin [Pithovirus LCPAC404] diamond 471 62 1 Viruses Pithoviruses             Pithovirus LCPAC404

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;