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contig_metadata

33 rows where bioproject = "PRJNA1120060", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 33 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 33 ✖

bioproject 1

  • PRJNA1120060 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
252962 252962 PRJNA1120060_P_NODE_2551001_length_252_cov_2.212291_g2532926_i0 PRJNA1120060 2551001 252 2.212291 5.57497332 Chlamydia caviae 83557 Bacteria Bacteria 52.8 0.023   NTclustered gi|29835126|gb|AE015925.1| 227941 g2532926 i0 100 0.111111111111111 28 0 11 0 3 30 157113 157140 Chlamydophila caviae GPIC, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia caviae
4069923 4069923 PRJNA1120060_P_NODE_1799184_length_281_cov_1.274038_g1781172_i0 PRJNA1120060 1799184 281 1.274038 3.58004678 Candidatus Neptunichlamydia sp. REUL1 3064277 Bacteria Bacteria 54.7 0.007   NTclustered gi|2578658231|emb|OY735137.1| 3064277 g1781172 i0 100 0.103202846975089 29 0 10 0 98 126 1801882 1801854 Candidatus Neptunochlamydia sp. REUL1 isolate 46185 genome assembly, chromosome: 4 blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia sp. REUL1
5341327 5341327 PRJNA1120060_P_NODE_1460585_length_295_cov_3.076577_g1442600_i0 PRJNA1120060 1460585 295 3.076577 9.07590215 Candidatus Criblamydia sequanensis 340071 Bacteria Bacteria 302 2.46e-77   NTclustered gi|678241437|emb|LK031773.1| 1437425 g1442600 i0 84.953 1.08135593220339 319 24 100 10 1 295 85450 85768 Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence blastn 319 302 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
9953395 9953395 PRJNA1120060_P_NODE_1122468_length_311_cov_2.752101_g1104533_i0 PRJNA1120060 1122468 311 2.752101 8.55903411 Chlamydia 810 Bacteria Bacteria 54.7 0.008   NTclustered gi|820669113|emb|LN847009.1| 83558 g1104533 i0 100 2.42443729903537 29 0 9 0 83 111 37248 37276 Chlamydia pneumoniae genome assembly GiD, chromosome : 1 blastn 754 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia pneumoniae
11228540 11228540 PRJNA1120060_P_NODE_1098609_length_311_cov_3.084034_g1080674_i0 PRJNA1120060 1098609 311 3.084034 9.59134574 Chlamydia 810 Bacteria Bacteria 56.5 0.002   NTclustered gi|2916079367|gb|CP137543.1| 83554 g1080674 i0 100 5.01607717041801 30 0 10 0 79 108 853496 853525 Chlamydia psittaci strain LS-2203 chromosome, complete genome blastn 1560 56.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
20643320 20643320 PRJNA1120060_P_NODE_1738117_length_283_cov_2.995238_g1720109_i0 PRJNA1120060 1738117 283 2.995238 8.47652354 Candidatus Criblamydia sequanensis 340071 Bacteria Bacteria 267 8.57e-67   NTclustered gi|678241437|emb|LK031773.1| 1437425 g1720109 i0 84.249 0.964664310954064 273 43 96 0 3 275 74291 74563 Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence blastn 273 267 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
22702250 22702250 PRJNA1120060_P_NODE_1270458_length_308_cov_3.846809_g1252513_i0 PRJNA1120060 1270458 308 3.846809 11.84817172 Chlamydia 810 Bacteria Bacteria 52.8 0.029   NTclustered gi|2921951987|gb|CP137898.1| 2766982 g1252513 i0 100 0.727272727272727 28 0 9 0 262 289 825543 825570 Chlamydia crocodili strain 26-06 chromosome, complete genome blastn 224 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia crocodili
24468391 24468391 PRJNA1120060_P_NODE_174460_length_486_cov_3.140436_g158278_i0 PRJNA1120060 174460 486 3.140436 15.26251896 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 52.8 0.047   NTclustered gi|971146634|emb|LN879502.1| 389348 g158278 i0 100 0.0576131687242798 28 0 6 0 6 33 195570 195543 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
27131657 27131657 PRJNA1120060_P_NODE_2201182_length_265_cov_1.364583_g2183130_i0 PRJNA1120060 2201182 265 1.364583 3.61614495 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 154 2.55e-43   NR HEV8052538.1 2052176 g2183130 i0 92 0.984905660377358 87 7 98.5 0 3 263 54 140 HEV8052538.1 LptF/LptG family permease [Parachlamydiaceae bacterium] diamond 261 154 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27226680 27226680 PRJNA1120060_P_NODE_2056483_length_270_cov_3.345178_g2038446_i0 PRJNA1120060 2056483 270 3.345178 9.0319806 Chlamydiia bacterium 2052156 Bacteria Bacteria 54.7 3.31e-6   NR MCK5787407.1 2052156 g2038446 i0 39.3 0.677777777777778 61 37 67.8 0 46 228 453 513 MCK5787407.1 hypothetical protein [Chlamydiia bacterium] diamond 183 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
27386081 27386081 PRJNA1120060_P_NODE_503283_length_366_cov_1.887372_g485665_i0 PRJNA1120060 503283 366 1.887372 6.90778152 Chlamydiota bacterium 2081524 Bacteria Bacteria 51.2 1.13e-4   NR NBO25032.1 2081524 g485665 i0 33.3 0.590163934426229 72 48 59 0 237 22 172 243 NBO25032.1 reverse transcriptase-like protein [Chlamydiota bacterium] diamond 216 51.2 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28300617 28300617 PRJNA1120060_P_NODE_2283466_length_262_cov_1.047619_g2265411_i0 PRJNA1120060 2283466 262 1.047619 2.74476178 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 142 4.31e-40   NR MBP7074580.1 2047756 g2265411 i0 74.7 1.99236641221374 87 22 99.6 0 2 262 103 189 MBP7074580.1 ABC-2 family transporter protein [Rhabdochlamydiaceae bacterium] diamond 522 142 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
28395159 28395159 PRJNA1120060_P_NODE_2012266_length_272_cov_2.301508_g1994233_i0 PRJNA1120060 2012266 272 2.301508 6.26010176 Chlamydiota bacterium 2081524 Bacteria Bacteria 43.9 0.0209   NR NGX41878.1 2081524 g1994233 i0 26.8 0.783088235294118 71 51 78.3 1 43 255 698 767 NGX41878.1 hypothetical protein [Chlamydiota bacterium] diamond 213 43.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28679188 28679188 PRJNA1120060_P_NODE_1593127_length_289_cov_2.912037_g1575134_i0 PRJNA1120060 1593127 289 2.912037 8.41578693 Parachlamydiales bacterium 2052178 Bacteria Bacteria 40.8 0.0333   NR MFA6119583.1 2052178 g1575134 i0 37.1 0.363321799307958 35 22 36.3 0 9 113 16 50 MFA6119583.1 hypothetical protein [Parachlamydiales bacterium] diamond 105 40.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
28868794 28868794 PRJNA1120060_P_NODE_2022068_length_272_cov_1.261307_g2004035_i0 PRJNA1120060 2022068 272 1.261307 3.43075504 Chlamydiia bacterium 2052156 Bacteria Bacteria 43.5 0.0267   NR MDB6080833.1 2052156 g2004035 i0 26.7 0.948529411764706 86 59 94.9 1 270 13 137 218 MDB6080833.1 hypothetical protein [Chlamydiia bacterium] diamond 258 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
29721975 29721975 PRJNA1120060_P_NODE_3596910_length_199_cov_4.730159_g3578782_i0 PRJNA1120060 3596910 199 4.730159 9.4130164099999991 Chlamydiales bacterium 2047757 Bacteria Bacteria 66.6 7.88e-11   NR HEV7737994.1 2047757 g3578782 i0 70.5 0.663316582914573 44 13 66.3 0 184 53 218 261 HEV7737994.1 DDE-type integrase/transposase/recombinase [Chlamydiales bacterium] diamond 132 66.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29722228 29722228 PRJNA1120060_P_NODE_86690_length_595_cov_2.802682_g72796_i0 PRJNA1120060 86690 595 2.802682 16.6759579 Chlamydiales bacterium 2047757 Bacteria Bacteria 63.9 3.1e-8   NR HEV7737633.1 2047757 g72796 i0 51.9 0.615126050420168 54 26 27.2 0 193 354 33 86 HEV7737633.1 ribonuclease H family protein [Chlamydiales bacterium] diamond 366 63.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29941957 29941957 PRJNA1120060_P_NODE_1147511_length_311_cov_2.432773_g1129576_i0 PRJNA1120060 1147511 311 2.432773 7.56592403 Chlamydiales bacterium 2047757 Bacteria Bacteria 45.1 0.0114   NR HEV7737633.1 2047757 g1129576 i0 44.4 0.520900321543408 54 22 44.4 1 242 105 33 86 HEV7737633.1 ribonuclease H family protein [Chlamydiales bacterium] diamond 162 45.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30037773 30037773 PRJNA1120060_P_NODE_2846011_length_245_cov_0.906977_g2827925_i0 PRJNA1120060 2846011 245 0.906977 2.22209365 Chlamydia trachomatis 813 Bacteria Bacteria 60.8 1.55e-8   NR CRH84835.1 813 g2827925 i0 96.7 0.36734693877551 30 1 36.7 0 67 156 275 304 CRH84835.1 PTS system%2C beta-glucoside-specific IIABC component [Chlamydia trachomatis] diamond 90 60.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
30162959 30162959 PRJNA1120060_P_NODE_1519952_length_292_cov_3.378995_g1501963_i0 PRJNA1120060 1519952 292 3.378995 9.8666654 Candidatus Protochlamydia sp. 2687294 Bacteria Bacteria 44.7 0.0137   NR MBA2369236.1 2687294 g1501963 i0 41.3 0.472602739726027 46 26 47.3 1 226 89 433 477 MBA2369236.1 FAD-dependent oxidoreductase [Candidatus Protochlamydia sp.] diamond 138 44.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp.
30321771 30321771 PRJNA1120060_P_NODE_1594592_length_289_cov_2.643519_g1576599_i0 PRJNA1120060 1594592 289 2.643519 7.63976991 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 82.8 3.35e-16   NR MBP7074227.1 2047756 g1576599 i0 57.5 0.757785467128028 73 30 75.8 1 18 236 56 127 MBP7074227.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 219 82.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
30323067 30323067 PRJNA1120060_P_NODE_3618272_length_197_cov_6.645161_g3600144_i0 PRJNA1120060 3618272 197 6.645161 13.09096717 Chlamydiales bacterium 2047757 Bacteria Bacteria 93.6 3.4900000000000005e-21   NR HLB52583.1 2047757 g3600144 i0 74.6 0.898477157360406 59 15 89.8 0 179 3 96 154 HLB52583.1 hypothetical protein [Chlamydiales bacterium] diamond 177 93.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30448995 30448995 PRJNA1120060_P_NODE_3401833_length_216_cov_4.489510_g3383713_i0 PRJNA1120060 3401833 216 4.48951 9.6973416 Chlamydiales bacterium 2047757 Bacteria Bacteria 66.2 9.9e-11   NR HEV7737633.1 2047757 g3383713 i0 58.8 0.708333333333333 51 21 70.8 0 62 214 8 58 HEV7737633.1 ribonuclease H family protein [Chlamydiales bacterium] diamond 153 66.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30480550 30480550 PRJNA1120060_P_NODE_3548313_length_203_cov_4.192308_g3530186_i0 PRJNA1120060 3548313 203 4.192308 8.51038524 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 107 4.32e-25   NR PIS02268.1 1973936 g3530186 i0 77.6 1.98029556650246 67 15 99 0 2 202 345 411 PIS02268.1 MAG: MFS transporter [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34] diamond 402 107 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34
31196301 31196301 PRJNA1120060_P_NODE_2984835_length_241_cov_5.404762_g2966738_i0 PRJNA1120060 2984835 241 5.404762 13.02547642 Pseudomonadati 3379134 Bacteria Bacteria 114 4.42e-28   NR WP_231909253.1 389348 g2966738 i0 75 3.97095435684647 80 20 99.6 0 240 1 243 322 WP_231909253.1 ABC transporter permease [Candidatus Protochlamydia naegleriophila] diamond 957 114 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
31323137 31323137 PRJNA1120060_P_NODE_3404775_length_215_cov_10.161972_g3386655_i0 PRJNA1120060 3404775 215 10.161972 21.8482398 Candidatus Neptunichlamydia 1891669 Bacteria Bacteria 86.3 1.11e-17   NR QVL57169.1 2698248 g3386655 i0 57.1 3.87906976744186 70 30 97.7 0 3 212 405 474 QVL57169.1 MAG: leucyl aminopeptidase [Simkaniaceae bacterium] diamond 834 86.7 0.995386389850058 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
31364241 31364241 PRJNA1120060_P_NODE_1689956_length_285_cov_3.037736_g1671952_i0 PRJNA1120060 1689956 285 3.037736 8.6575476 Chlamydiales bacterium 2047757 Bacteria Bacteria 72 1.92e-12   NR HEV7737633.1 2047757 g1671952 i0 47.8 2.81052631578947 67 35 70.5 0 285 85 22 88 HEV7737633.1 ribonuclease H family protein [Chlamydiales bacterium] diamond 801 72 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31491000 31491000 PRJNA1120060_P_NODE_1967856_length_274_cov_1.626866_g1949830_i0 PRJNA1120060 1967856 274 1.626866 4.45761284 Candidatus Protochlamydia sp. 2687294 Bacteria Bacteria 43.5 0.0268   NR MBA2367916.1 2687294 g1949830 i0 34 0.58029197080292 53 35 58 0 237 79 205 257 MBA2367916.1 TIGR01777 family protein [Candidatus Protochlamydia sp.] diamond 159 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp.
31680913 31680913 PRJNA1120060_P_NODE_2664817_length_249_cov_2.301136_g2646736_i0 PRJNA1120060 2664817 249 2.301136 5.72982864 Chlamydiota bacterium 2081524 Bacteria Bacteria 42.7 0.0396   NR MBI1884324.1 2081524 g2646736 i0 32.4 0.855421686746988 71 43 83.1 2 215 9 56 123 MBI1884324.1 DUF2079 domain-containing protein [Chlamydiota bacterium] diamond 213 42.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
31702743 31702743 PRJNA1120060_P_NODE_2809217_length_246_cov_0.895954_g2791131_i0 PRJNA1120060 2809217 246 0.895954 2.20404684 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0364   NR MBI2743259.1 2047757 g2791131 i0 41.8 1.31707317073171 55 30 65.9 2 245 84 28 81 MBI2743259.1 guanosine monophosphate reductase [Chlamydiales bacterium] diamond 324 43.1 0.990719257540603 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31997280 31997280 PRJNA1120060_P_NODE_239238_length_446_cov_2.367292_g222468_i0 PRJNA1120060 239238 446 2.367292 10.55812232 Chlamydiales bacterium 2047757 Bacteria Bacteria 84.7 2.41e-16   NR HEV7737633.1 2047757 g222468 i0 48.6 0.497757847533632 74 38 49.8 0 216 437 13 86 HEV7737633.1 ribonuclease H family protein [Chlamydiales bacterium] diamond 222 84.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32217901 32217901 PRJNA1120060_P_NODE_1032938_length_311_cov_8.021008_g1015004_i0 PRJNA1120060 1032938 311 8.021008 24.94533488 Chlamydiales bacterium 2047757 Bacteria Bacteria 95.5 1.5600000000000002e-21   NR MFI5343593.1 2047757 g1015004 i0 90 0.964630225080386 50 5 48.2 0 151 2 143 192 MFI5343593.1 SDR family NAD(P)-dependent oxidoreductase [Chlamydiales bacterium] diamond 300 95.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32472629 32472629 PRJNA1120060_P_NODE_3259059_length_228_cov_10.425806_g3240951_i0 PRJNA1120060 3259059 228 10.425806 23.77083768 Chlamydiia bacterium 2052156 Bacteria Bacteria 42.4 0.0407   NR MCB1080985.1 2052156 g3240951 i0 33.8 0.855263157894737 65 42 85.5 1 215 21 289 352 MCB1080985.1 AAA family ATPase [Chlamydiia bacterium] diamond 195 42.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;