RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1120060" and tax_clade = "Human papillomavirus types"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 9 ✖

bioproject 1

  • PRJNA1120060 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2818481 2818481 PRJNA1120060_P_NODE_553543_length_356_cov_3.787986_g535865_i0 PRJNA1120060 553543 356 3.787986 13.48523016 Human papillomavirus 10566 Viruses Viruses 636 7.31e-178   NTclustered gi|1559669430|gb|MH777268.2| 10566 g535865 i0 98.876 1.13483146067416 356 4 100 0 1 356 6912 6557 MAG: Human papillomavirus isolate HPV-mSK_126, complete genome blastn 404 636 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
5363901 5363901 PRJNA1120060_P_NODE_3224625_length_230_cov_3.382166_g3206518_i0 PRJNA1120060 3224625 230 3.382166 7.7789818 Human papillomavirus 10566 Viruses Viruses 420 4.89e-113   NTclustered gi|1559669430|gb|MH777268.2| 10566 g3206518 i0 99.565 1.9304347826087 230 1 100 0 1 230 3542 3313 MAG: Human papillomavirus isolate HPV-mSK_126, complete genome blastn 444 420 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
6620097 6620097 PRJNA1120060_P_NODE_1740226_length_283_cov_2.600000_g1722218_i0 PRJNA1120060 1740226 283 2.6 7.358 Human papillomavirus 10566 Viruses Viruses 363 1.0599999999999999e-95   NTclustered gi|1559669430|gb|MH777268.2| 10566 g1722218 i0 99.497 1 199 1 100 0 85 283 7149 6951 MAG: Human papillomavirus isolate HPV-mSK_126, complete genome blastn 283 363 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
7900993 7900993 PRJNA1120060_P_NODE_2179427_length_265_cov_9.145833_g2161375_i0 PRJNA1120060 2179427 265 9.145833 24.23645745 Human papillomavirus 10566 Viruses Viruses 479 9.38e-131   NTclustered gi|1559669430|gb|MH777268.2| 10566 g2161375 i0 99.245 1.88679245283019 265 2 100 0 1 265 6357 6093 MAG: Human papillomavirus isolate HPV-mSK_126, complete genome blastn 500 479 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
9193942 9193942 PRJNA1120060_P_NODE_438128_length_379_cov_8.192810_g420631_i0 PRJNA1120060 438128 379 8.19281 31.0507499 Human papillomavirus 10566 Viruses Viruses 390 6.74e-104   NTclustered gi|1559669430|gb|MH777268.2| 10566 g420631 i0 99.078 0.965699208443272 217 2 97 0 2 218 4630 4846 MAG: Human papillomavirus isolate HPV-mSK_126, complete genome blastn 366 390 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
9197125 9197125 PRJNA1120060_P_NODE_64768_length_654_cov_5.759036_g52152_i0 PRJNA1120060 64768 654 5.759036 37.66409544 Human papillomavirus 10566 Viruses Viruses 1181 0   NTclustered gi|1559669430|gb|MH777268.2| 10566 g52152 i0 99.235 4.96483180428135 654 5 100 0 1 654 76 729 MAG: Human papillomavirus isolate HPV-mSK_126, complete genome blastn 3247 1181 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
14260298 14260298 PRJNA1120060_P_NODE_1005072_length_312_cov_2.497908_g987143_i0 PRJNA1120060 1005072 312 2.497908 7.79347296 Human papillomavirus 10566 Viruses Viruses 279 1.23e-70   NTclustered gi|1144331739|gb|KX781283.1| 10566 g987143 i0 100 3.37820512820513 151 0 97 0 162 312 2906 2756 Human papillomavirus isolate Dysk4, complete genome blastn 1054 279 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
23193533 23193533 PRJNA1120060_P_NODE_1676379_length_286_cov_1.492958_g1658378_i0 PRJNA1120060 1676379 286 1.492958 4.26985988 Human papillomavirus 10566 Viruses Viruses 501 2.18e-137   NTclustered gi|1559669484|gb|MH777321.2| 10566 g1658378 i0 98.252 14.8251748251748 286 5 100 0 1 286 4458 4743 MAG: Human papillomavirus isolate HPV-mSK_179, complete genome blastn 4240 501 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
23196495 23196495 PRJNA1120060_P_NODE_1886839_length_277_cov_2.500000_g1868820_i0 PRJNA1120060 1886839 277 2.5 6.925 Human papillomavirus 10566 Viruses Viruses 507 4.53e-139   NTclustered gi|371486189|gb|JF966371.1| 10566 g1868820 i0 99.639 3 277 1 100 0 1 277 1386 1662 Human papillomavirus isolate 915 F 06 002 KN1, complete genome blastn 831 507 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;