RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1120060", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1120060 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30596228 30596228 PRJNA1120060_P_NODE_3043893_length_238_cov_7.587879_g3025792_i0 PRJNA1120060 3043893 238 7.587879 18.05915202 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.9 2.28e-4   NR XP_013762273.1 461836 g3025792 i0 60 0.983193277310924 40 14 50.4 1 118 237 225 262 XP_013762273.1 uncharacterized protein AMSG_01101, partial [Thecamonas trahens ATCC 50062] diamond 234 48.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30827203 30827203 PRJNA1120060_P_NODE_234934_length_448_cov_3.128000_g218193_i0 PRJNA1120060 234934 448 3.128 14.01344 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 62.8 2.96e-8   NR XP_013753190.1 461836 g218193 i0 50 0.636160714285714 48 24 32.1 0 431 288 338 385 XP_013753190.1 uncharacterized protein AMSG_12392 [Thecamonas trahens ATCC 50062] diamond 285 62.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;