RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1118794" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1118794 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7883303 7883303 PRJNA1118794_P_NODE_15387_length_372_cov_8.749164_g14637_i0 PRJNA1118794 15387 372 8.749164 32.54689008 Tubulinea group 04 sp. P18 1215998 Tubulinea other_Eukaryota 172 2.5999999999999996e-38   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g14637 i0 78.652 34.8951612903226 267 51 72 5 1 267 1429 1689 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 12981 172 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18
15533407 15533407 PRJNA1118794_P_NODE_4473_length_672_cov_6.854758_g3754_i0 PRJNA1118794 4473 672 6.854758 46.06397376 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 202 6.279999999999998e-47   NTclustered gi|511487963|gb|JX898537.1| 1260765 g3754 i0 81.569 24.0714285714286 255 38 38 7 247 498 356 108 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16176 202 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
26783406 26783406 PRJNA1118794_P_NODE_48021_length_252_cov_1.290503_g47271_i0 PRJNA1118794 48021 252 1.290503 3.25206756 Amoeba proteus 5775 Tubulinea other_Eukaryota 59.3 4.47e-8   NR AKN09692.1 5775 g47271 i0 42.2 0.761904761904762 64 36 76.2 1 27 218 221 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 192 59.3 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;