RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1118794" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28795801 28795801 PRJNA1118794_P_NODE_17447_length_355_cov_4.624113_g16697_i0 PRJNA1118794 17447 355 4.624113 16.41560115 Opisthokonta 33154 Fungi Fungi 96.3 8.8e-23   NR KAF7684253.1 164912 g16697 i0 54.4 6.9887323943662 103 46 87 1 315 7 5 106 KAF7684253.1 60S ribosomal protein L32 [Astathelohania contejeani] diamond 2481 96.3 1 Eukaryota Opisthokonta Fungi Microsporidia     Astathelohaniidae Astathelohania Astathelohania contejeani
31923937 31923937 PRJNA1118794_P_NODE_63677_length_245_cov_0.895349_g62927_i0 PRJNA1118794 63677 245 0.895349 2.19360505 Eukaryota 2759 Fungi Fungi 76.3 4.34e-14   NR KAK6090553.1 40135 g62927 i0 77.3 8.69387755102041 44 10 53.9 0 10 141 316 359 KAK6090553.1 hypothetical protein P3W45_000276 [Vairimorpha bombi] diamond 2130 76.3 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vairimorpha Vairimorpha bombi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;