RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1118794" and tax_phylum = "Fibrobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1118794 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12984605 12984605 PRJNA1118794_P_NODE_45351_length_257_cov_1.668478_g44601_i0 PRJNA1118794 45351 257 1.668478 4.28798846 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 257 4.62e-64   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g44601 i0 85.385 75.8560311284047 260 25 98 11 7 257 1594417 1594162 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 19495 257 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
32502811 32502811 PRJNA1118794_P_NODE_76079_length_214_cov_4.560284_g75329_i0 PRJNA1118794 76079 214 4.560284 9.75900776 Fibrobacter sp. 35828 Bacteria Bacteria 142 7.36e-40   NR NLG16226.1 35828 g75329 i0 100 0.981308411214953 70 0 98.1 0 3 212 57 126 NLG16226.1 metal ABC transporter permease [Fibrobacter sp.] diamond 210 142 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;