RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1118794", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA1118794 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1505161 1505161 PRJNA1118794_P_NODE_16422_length_363_cov_7.610345_g15672_i0 PRJNA1118794 16422 363 7.610345 27.62555235 Ripothoz virus 3131336 Viruses Viruses 93.5 2.03e-14   NTclustered gi|2717322249|gb|PP173638.1| 3131336 g15672 i0 81.739 23.030303030303 115 17 31 3 46 158 5317 5429 MAG: Ripothoz virus isolate MP3_k141_314104 genomic sequence blastn 8360 93.5 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales     Ripothoz virus
6608488 6608488 PRJNA1118794_P_NODE_18846_length_346_cov_1.124542_g18096_i0 PRJNA1118794 18846 346 1.124542 3.89091532 Carlavirus rhochrysanthemi 3427791 Viruses Viruses 353 8.02e-93   NTclustered gi|1571845974|ref|NC_040703.1| 2116736 g18096 i0 85.174 0.994219653179191 344 51 99 0 3 346 1788 1445 Chrysanthemum virus R strain BJ, complete genome blastn 344 353 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus rhochrysanthemi
12984681 12984681 PRJNA1118794_P_NODE_51_length_4038_cov_110.911980_g30_i0 PRJNA1118794 51 4038 110.91198 4478.6257524 Alphacarmovirus dianthi 3047728 Viruses Viruses 6857 0   NTclustered gi|797178909|gb|KR002041.1| 11986 g30 i0 97.881 45.55720653789 3965 84 99 0 67 4031 3966 2 Carnation mottle virus, complete genome blastn 183960 6857 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Alphacarmovirus Alphacarmovirus dianthi
21907269 21907269 PRJNA1118794_P_NODE_14018_length_386_cov_1.980831_g13268_i0 PRJNA1118794 14018 386 1.980831 7.64600766 Alphacarmovirus dianthi 3047728 Viruses Viruses 630 3.7199999999999986e-176   NTclustered gi|2073357638|gb|MZ405660.1| 11986 g13268 i0 96.114 26.9844559585492 386 15 100 0 1 386 659 274 Carnation mottle virus isolate DSMZ PV-0878, partial sequence blastn 10416 630 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Alphacarmovirus Alphacarmovirus dianthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;