RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1118794", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1118794 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28173383 28173383 PRJNA1118794_P_NODE_68286_length_243_cov_0.905882_g67536_i0 PRJNA1118794 68286 243 0.905882 2.20129326 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 54.3 3.15e-6   NR MBR1586986.1 2212473 g67536 i0 48.1 0.641975308641975 52 27 64.2 0 14 169 1 52 MBR1586986.1 autotransporter-associated beta strand repeat-containing protein [Kiritimatiellia bacterium] diamond 156 54.3 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28868137 28868137 PRJNA1118794_P_NODE_59768_length_246_cov_1.780347_g59018_i0 PRJNA1118794 59768 246 1.780347 4.37965362 Pontiellaceae bacterium 2813032 Bacteria Bacteria 60.8 1.57e-8   NR MBN2161599.1 2813032 g59018 i0 54.7 1.64634146341463 64 29 78 0 3 194 552 615 MBN2161599.1 tetratricopeptide repeat protein [Pontiellaceae bacterium] diamond 405 60.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Pontiellaceae   Pontiellaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;