RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1118794", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1118794 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4057427 4057427 PRJNA1118794_P_NODE_31764_length_287_cov_2.775701_g31014_i0 PRJNA1118794 31764 287 2.775701 7.96626187 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 237 6.83e-58   NTclustered gi|2621703088|emb|OY760517.1| 2614255 g31014 i0 83.658 647.519163763066 257 36 89 6 2 255 3133500 3133247 MAG: Melioribacteraceae bacterium isolate c8b6aad9-4aa7-488e-baf1-dd4234e1cecc genome assembly, chromosome: 1 blastn 185838 237 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
27352785 27352785 PRJNA1118794_P_NODE_52843_length_249_cov_1.625000_g52093_i0 PRJNA1118794 52843 249 1.625 4.04625 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 77 3.4e-14   NR MEI9971262.1 2026749 g52093 i0 61.5 1.80722891566265 78 28 94 1 245 12 121 196 MEI9971262.1 putative Ig domain-containing protein [Ignavibacteriota bacterium] diamond 450 77 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
28710415 28710415 PRJNA1118794_P_NODE_50387_length_250_cov_2.389831_g49637_i0 PRJNA1118794 50387 250 2.389831 5.9745775 Ignavibacteria bacterium 2053306 Bacteria Bacteria 149 2.929999999999999e-41   NR NLT51695.1 2053306 g49637 i0 86.7 0.996 83 11 99.6 0 1 249 29 111 NLT51695.1 rod shape-determining protein RodA [Ignavibacteria bacterium] diamond 249 149 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30415976 30415976 PRJNA1118794_P_NODE_69353_length_243_cov_0.905882_g68603_i0 PRJNA1118794 69353 243 0.905882 2.20129326 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 68.2 1.21e-11   NR MCB0743308.1 2026749 g68603 i0 55.9 3.74074074074074 68 21 84 2 1 204 160 218 MCB0743308.1 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase [Ignavibacteriota bacterium] diamond 909 68.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
31639217 31639217 PRJNA1118794_P_NODE_31896_length_287_cov_1.439252_g31146_i0 PRJNA1118794 31896 287 1.439252 4.13065324 Pseudomonadati 3379134 Bacteria Bacteria 60.8 6.52e-9   NR MCI0706888.1 2026749 g31146 i0 37.2 3.31358885017422 94 49 98.3 4 4 285 33 116 MCI0706888.1 superoxide dismutase family protein [Ignavibacteriota bacterium] diamond 951 61.2 0.993464052287582 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
31996347 31996347 PRJNA1118794_P_NODE_54418_length_249_cov_0.875000_g53668_i0 PRJNA1118794 54418 249 0.875 2.17875 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 63.2 2.68e-9   NR MCJ7554389.1 2651163 g53668 i0 39 2.80722891566265 77 45 92.8 1 249 19 958 1032 MCJ7554389.1 NPCBM/NEW2 domain-containing protein [Ignavibacteriaceae bacterium] diamond 699 63.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;