RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1118794", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1118794 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27826301 27826301 PRJNA1118794_P_NODE_72424_length_241_cov_1.375000_g71674_i0 PRJNA1118794 72424 241 1.375 3.31375 Fidelibacterota bacterium 2026760 Bacteria Bacteria 102 2.6199999999999998e-23   NR MDB4125931.1 2026760 g71674 i0 59.5 1.96680497925311 79 32 98.3 0 240 4 133 211 MDB4125931.1 M14 family zinc carboxypeptidase [Fidelibacterota bacterium] diamond 474 102 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
30532954 30532954 PRJNA1118794_P_NODE_33673_length_283_cov_1.276190_g32923_i0 PRJNA1118794 33673 283 1.27619 3.6116177 root 1 Root_unresolved Root_unresolved 44.3 0.0169   NR MBI66097.1 2026760 g32923 i0 65.4 0.837455830388693 26 9 27.6 0 223 146 2 27 MBI66097.1 hypothetical protein [Fidelibacterota bacterium] diamond 237 44.3 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32113955 32113955 PRJNA1118794_P_NODE_42878_length_262_cov_2.121693_g42128_i0 PRJNA1118794 42878 262 2.121693 5.55883566 Pseudomonadati 3379134 Bacteria Bacteria 63.2 3.02e-9   NR MEA3287456.1 2026760 g42128 i0 43.9 1.84351145038168 82 44 93.9 1 254 9 692 771 MEA3287456.1 tandem-95 repeat protein [Fidelibacterota bacterium] diamond 483 63.2 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;