RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where bioproject = "PRJNA1118794", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 14 ✖

tax_clade 1

  • Bacteria candidate phyla · 14 ✖

bioproject 1

  • PRJNA1118794 · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1505113 1505113 PRJNA1118794_P_NODE_1262_length_1301_cov_20.659609_g846_i0 PRJNA1118794 1262 1301 20.659609 268.78151309 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 Bacteria Bacteria 1690 0   NTclustered gi|1340357306|gb|CP025011.1| 2056494 g846 i0 90.229 359.544196771714 1310 106 99 20 3 1301 1287359 1288657 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 chromosome, complete genome blastn 467767 1690 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20
4057897 4057897 PRJNA1118794_P_NODE_73104_length_241_cov_0.916667_g72354_i0 PRJNA1118794 73104 241 0.916667 2.20916747 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 162 1.8e-46   NR HEY4160915.1 2973664 g72354 i0 88.8 0.995850622406639 80 9 99.6 0 240 1 189 268 HEY4160915.1 glycoside hydrolase family 57 protein [Candidatus Saccharimonadales bacterium] diamond 240 162 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
7883775 7883775 PRJNA1118794_P_NODE_51347_length_250_cov_0.870056_g50597_i0 PRJNA1118794 51347 250 0.870056 2.17514 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 126 2.31e-35   NR MEJ0072973.1 2026720 g50597 i0 85.7 2.772 77 11 92.4 0 231 1 1 77 MEJ0072973.1 30S ribosomal protein S8 [Candidatus Saccharibacteria bacterium] diamond 693 126 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
9158609 9158609 PRJNA1118794_P_NODE_50088_length_251_cov_0.865169_g49338_i0 PRJNA1118794 50088 251 0.865169 2.17157419 Candidatus Nanosynbacter sp. BB002 3393757 Bacteria Bacteria 453 5.34e-123   NTclustered gi|2692798772|gb|CP146064.1| 3393757 g49338 i0 99.203 2 251 2 100 0 1 251 560804 560554 Candidatus Nanosynbacter sp. BB002 chromosome, complete genome blastn 502 453 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. BB002
12984662 12984662 PRJNA1118794_P_NODE_50411_length_250_cov_2.146893_g49661_i0 PRJNA1118794 50411 250 2.146893 5.3672325 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 Bacteria Bacteria 267 7.43e-67   NTclustered gi|1340357306|gb|CP025011.1| 2056494 g49661 i0 85.944 179.26 249 35 99 0 2 250 766171 765923 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 chromosome, complete genome blastn 44815 267 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20
14259450 14259450 PRJNA1118794_P_NODE_20692_length_334_cov_34.425287_g19942_i0 PRJNA1118794 20692 334 34.425287 114.98045858 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 398 3.5099999999999994e-106   NTclustered gi|1958071672|gb|CP064992.1| 2026720 g19942 i0 93.916 151.535928143713 263 16 79 0 72 334 636646 636384 Candidatus Saccharibacteria bacterium isolate Hirt_18-Q3-R61-65_BATAC.98_uni chromosome, complete genome blastn 50613 398 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
14259861 14259861 PRJNA1118794_P_NODE_53552_length_249_cov_0.875000_g52802_i0 PRJNA1118794 53552 249 0.875 2.17875 Candidatus Saccharibacteria bacterium oral taxon 955 2572087 Bacteria Bacteria 399 6.989999999999999e-107   NTclustered gi|1663049602|gb|CP040008.1| 2572087 g52802 i0 95.582 99.5903614457831 249 11 100 0 1 249 140959 140711 Candidatus Saccharibacteria bacterium oral taxon 955 strain PM004 chromosome, complete genome blastn 24798 399 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955
21427000 21427000 PRJNA1118794_P_NODE_58077_length_247_cov_0.885057_g57327_i0 PRJNA1118794 58077 247 0.885057 2.18609079 Candidatus Saccharimonas 1331051 Bacteria Bacteria 418 1.9099999999999998e-112   NTclustered gi|499052612|gb|CP005957.1| 1332188 g57327 i0 97.177 67.9878542510122 248 6 100 1 1 247 694962 694715 Candidatus Saccharimonas aalborgensis isolate TM71 chromosome, complete genome blastn 16793 418 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas aalborgensis
24456902 24456902 PRJNA1118794_P_NODE_38980_length_271_cov_1.318182_g38230_i0 PRJNA1118794 38980 271 1.318182 3.57227322 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 126 1.44e-24   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g38230 i0 92.135 27.5129151291513 89 7 33 0 67 155 152073 152161 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 7456 126 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1
28931354 28931354 PRJNA1118794_P_NODE_73288_length_241_cov_0.916667_g72538_i0 PRJNA1118794 73288 241 0.916667 2.20916747 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 95.5 8.270000000000001e-21   NR HEY4160819.1 2973664 g72538 i0 58.8 0.995850622406639 80 33 99.6 0 1 240 411 490 HEY4160819.1 glycosyltransferase [Candidatus Saccharimonadales bacterium] diamond 240 95.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
31205075 31205075 PRJNA1118794_P_NODE_61595_length_246_cov_0.890173_g60845_i0 PRJNA1118794 61595 246 0.890173 2.18982558 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 151 9.999999999999999e-43   NR HEY4160458.1 2973664 g60845 i0 85.2 0.98780487804878 81 12 98.8 0 244 2 261 341 HEY4160458.1 endolytic transglycosylase MltG [Candidatus Saccharimonadales bacterium] diamond 243 151 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
31521954 31521954 PRJNA1118794_P_NODE_56776_length_248_cov_0.880000_g56026_i0 PRJNA1118794 56776 248 0.88 2.1824 Candidatus Nanosynbacter sp. P2B_S1_bin.0.1 2962903 Bacteria Bacteria 63.5 6.31e-10   NR MCP9492590.1 2962903 g56026 i0 47.4 0.919354838709677 76 36 90.7 2 21 245 125 197 MCP9492590.1 methyltransferase domain-containing protein [Candidatus Nanosynbacter sp. P2B_S1_bin.0.1] diamond 228 63.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. P2B_S1_bin.0.1
31964535 31964535 PRJNA1118794_P_NODE_50718_length_250_cov_1.344633_g49968_i0 PRJNA1118794 50718 250 1.344633 3.3615825 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 66.6 7.77e-12   NR MBP7837087.1 2026720 g49968 i0 67.4 1.032 43 14 51.6 0 1 129 73 115 MBP7837087.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 258 66.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32376077 32376077 PRJNA1118794_P_NODE_33219_length_284_cov_1.355450_g32469_i0 PRJNA1118794 33219 284 1.35545 3.849478 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 80.1 2.88e-15   NR HEY4160883.1 2973664 g32469 i0 50.5 1.08802816901408 103 41 98.2 2 4 282 93 195 HEY4160883.1 G1 family glutamic endopeptidase [Candidatus Saccharimonadales bacterium] diamond 309 80.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;