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contig_metadata

34 rows where bioproject = "PRJNA1115053" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 34 ✖

bioproject 1

  • PRJNA1115053 · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1024342 1024342 PRJNA1115053_S_NODE_231301_length_182_cov_1.035971_g229484_i0 PRJNA1115053 231301 182 1.035971 1.88546722 Methanothermobacter 145260 Archaea Archaea 152 1.4799999999999998e-32   NTclustered gi|2308640859|gb|CP104550.1| 145261 g229484 i0 81.768 2.98351648351648 181 33 99 0 1 181 494382 494562 Methanothermobacter wolfeii strain DSM 2970 chromosome, complete genome blastn 543 152 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter wolfeii
6127671 6127671 PRJNA1115053_S_NODE_93245_length_266_cov_4.228700_g91428_i0 PRJNA1115053 93245 266 4.2287 11.248342 archaeon 1906665 Archaea Archaea 115 2.47e-28   NR RYH13746.1 1906665 g91428 i0 71.8 0.800751879699248 71 20 80.1 0 3 215 333 403 RYH13746.1 MAG: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [archaeon] diamond 213 115 1 Archaea               archaeon
7881733 7881733 PRJNA1115053_S_NODE_54027_length_327_cov_3.830986_g52210_i0 PRJNA1115053 54027 327 3.830986 12.52732422 archaeon 1906665 Archaea Archaea 107 1.85e-26   NR RYG67652.1 1906665 g52210 i0 60.4 0.926605504587156 101 39 92.7 1 326 24 110 209 RYG67652.1 MAG: hypothetical protein EON64_06980, partial [archaeon] diamond 303 107 1 Archaea               archaeon
21905961 21905961 PRJNA1115053_S_NODE_64558_length_306_cov_6.106464_g62741_i0 PRJNA1115053 64558 306 6.106464 18.68577984 archaeon 1906665 Archaea Archaea 144 1.42e-41   NR RYH30350.1 1906665 g62741 i0 79.7 1.54901960784314 79 16 77.5 0 2 238 79 157 RYH30350.1 MAG: hypothetical protein EON65_05480 [archaeon] diamond 474 144 1 Archaea               archaeon
25250711 25250711 PRJNA1115053_S_NODE_233980_length_181_cov_1.072464_g232163_i0 PRJNA1115053 233980 181 1.072464 1.94115984 Methanobrevibacter 2172 Archaea Archaea 235 1.42e-57   NTclustered gi|2791693311|gb|CP144200.1| 2173 g232163 i0 91.765 6.57458563535912 170 13 93 1 1 169 383906 384075 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1190 235 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
26846719 26846719 PRJNA1115053_S_NODE_75921_length_288_cov_5.518367_g74104_i0 PRJNA1115053 75921 288 5.518367 15.89289696 archaeon 1906665 Archaea Archaea 102 8.56e-26   NR RYG63904.1 1906665 g74104 i0 84.1 0.65625 63 10 65.6 0 3 191 64 126 RYG63904.1 MAG: hypothetical protein EON64_15030 [archaeon] diamond 189 102 1 Archaea               archaeon
27225889 27225889 PRJNA1115053_S_NODE_341103_length_152_cov_1.403670_g339286_i0 PRJNA1115053 341103 152 1.40367 2.1335784 Methanobacteriaceae archaeon 2099680 Archaea Archaea 101 2.6e-23   NR NYB25877.1 2099680 g339286 i0 100 1.97368421052632 50 0 98.7 0 2 151 112 161 NYB25877.1 SMC family ATPase [Methanobacteriaceae archaeon] diamond 300 101 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
27289254 27289254 PRJNA1115053_S_NODE_206683_length_191_cov_1.621622_g204866_i0 PRJNA1115053 206683 191 1.621622 3.09729802 archaeon 1906665 Archaea Archaea 44.7 0.00119   NR RYY73917.1 1906665 g204866 i0 100 0.738219895287958 20 0 31.4 0 23 82 91 110 RYY73917.1 MAG: 50S ribosomal protein P1 [archaeon] diamond 141 44.7 1 Archaea               archaeon
27447466 27447466 PRJNA1115053_S_NODE_228203_length_183_cov_1.135714_g226386_i0 PRJNA1115053 228203 183 1.135714 2.07835662 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 40.8 0.0296   NR MEX2059871.1 2202732 g226386 i0 44.4 0.590163934426229 36 20 59 0 177 70 14 49 MEX2059871.1 YnfA family protein [Nitrosopumilaceae archaeon] diamond 108 40.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
27731688 27731688 PRJNA1115053_S_NODE_107864_length_251_cov_3.658654_g106047_i0 PRJNA1115053 107864 251 3.658654 9.18322154 archaeon 1906665 Archaea Archaea 45.1 0.00629   NR RYH27824.1 1906665 g106047 i0 55.9 0.406374501992032 34 15 40.6 0 246 145 652 685 RYH27824.1 MAG: acyl-CoA dehydrogenase [archaeon] diamond 102 45.1 1 Archaea               archaeon
27731694 27731694 PRJNA1115053_S_NODE_175664_length_205_cov_1.623457_g173847_i0 PRJNA1115053 175664 205 1.623457 3.32808685 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 131 4.01e-36   NR WP_288267474.1 253161 g173847 i0 92.5 0.980487804878049 67 5 98 0 203 3 170 236 WP_288267474.1 DUF169 domain-containing protein, partial [uncultured Methanobrevibacter sp.] diamond 201 131 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
27857631 27857631 PRJNA1115053_S_NODE_47625_length_342_cov_4.688963_g45808_i0 PRJNA1115053 47625 342 4.688963 16.03625346 archaeon 1906665 Archaea Archaea 200 6.899999999999999e-58   NR RYG69930.1 1906665 g45808 i0 90.7 0.947368421052632 108 10 94.7 0 1 324 607 714 RYG69930.1 MAG: hypothetical protein EON64_01505 [archaeon] diamond 324 200 1 Archaea               archaeon
27889136 27889136 PRJNA1115053_S_NODE_121705_length_239_cov_3.474490_g119888_i0 PRJNA1115053 121705 239 3.47449 8.3040311 archaeon 1906665 Archaea Archaea 85.1 2.63e-18   NR RYH28342.1 1906665 g119888 i0 50.6 0.99163179916318 79 37 99.2 1 1 237 115 191 RYH28342.1 MAG: type II toxin-antitoxin system RatA family toxin [archaeon] diamond 237 85.1 1 Archaea               archaeon
28267968 28267968 PRJNA1115053_S_NODE_125486_length_236_cov_2.984456_g123669_i0 PRJNA1115053 125486 236 2.984456 7.04331616 archaeon 1906665 Archaea Archaea 110 4.1e-28   NR RYG65124.1 1906665 g123669 i0 84.4 0.813559322033898 64 10 81.4 0 235 44 149 212 RYG65124.1 MAG: 30S ribosomal protein S5 [archaeon] diamond 192 110 1 Archaea               archaeon
28299683 28299683 PRJNA1115053_S_NODE_203986_length_192_cov_1.899329_g202169_i0 PRJNA1115053 203986 192 1.899329 3.64671168 Nanobdellota archaeon 2026764 Archaea Archaea 42.7 0.019   NR MEK6969783.1 2026764 g202169 i0 45.9 0.578125 37 20 57.8 0 121 11 35 71 MEK6969783.1 hypothetical protein [Nanoarchaeota archaeon] diamond 111 42.7 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
28520837 28520837 PRJNA1115053_S_NODE_153207_length_217_cov_3.408046_g151390_i0 PRJNA1115053 153207 217 3.408046 7.39545982 archaeon 1906665 Archaea Archaea 103 1.23e-26   NR RYH12653.1 1906665 g151390 i0 73.6 0.995391705069124 72 18 98.2 1 216 4 53 124 RYH12653.1 MAG: hypothetical protein EON65_37650 [archaeon] diamond 216 103 1 Archaea               archaeon
28868076 28868076 PRJNA1115053_S_NODE_77568_length_286_cov_2.172840_g75751_i0 PRJNA1115053 77568 286 2.17284 6.2143224 Methanobrevibacter sp. 66852 Archaea Archaea 60.5 3.56e-8   NR WP_330008794.1 66852 g75751 i0 100 0.713286713286713 34 0 35.7 0 3 104 725 758 WP_330008794.1 ABC transporter permease [Methanobrevibacter sp.] diamond 204 60.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29089148 29089148 PRJNA1115053_S_NODE_118868_length_242_cov_0.964824_g117051_i0 PRJNA1115053 118868 242 0.964824 2.33487408 Methanothrix sp. 90426 Archaea Archaea 47.4 7.19e-4   NR MCK9566210.1 90426 g117051 i0 45.9 0.45867768595041303 37 20 45.9 0 50 160 20 56 MCK9566210.1 hypothetical protein [Methanothrix sp.] diamond 111 47.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29436102 29436102 PRJNA1115053_S_NODE_34930_length_381_cov_5.686391_g33116_i0 PRJNA1115053 34930 381 5.686391 21.66514971 archaeon 1906665 Archaea Archaea 65.9 1.37e-10   NR RYG68310.1 1906665 g33116 i0 61.8 0.598425196850394 76 26 59.1 3 1 225 80 153 RYG68310.1 MAG: hypothetical protein EON64_05455 [archaeon] diamond 228 65.9 1 Archaea               archaeon
29467601 29467601 PRJNA1115053_S_NODE_195390_length_196_cov_1.254902_g193573_i0 PRJNA1115053 195390 196 1.254902 2.45960792 archaeon 1906665 Archaea Archaea 83.2 6.36e-18   NR RYH27837.1 1906665 g193573 i0 70.4 0.826530612244898 54 16 82.7 0 192 31 127 180 RYH27837.1 MAG: hypothetical protein EON65_12940 [archaeon] diamond 162 83.2 1 Archaea               archaeon
29562579 29562579 PRJNA1115053_S_NODE_113350_length_246_cov_3.083744_g111533_i0 PRJNA1115053 113350 246 3.083744 7.58601024 archaeon 1906665 Archaea Archaea 56.2 2.12e-8   NR RYH24039.1 1906665 g111533 i0 45.7 0.560975609756098 46 25 56.1 0 178 41 12 57 RYH24039.1 MAG: hypothetical protein EON65_17135 [archaeon] diamond 138 56.2 1 Archaea               archaeon
29751891 29751891 PRJNA1115053_S_NODE_350231_length_151_cov_1.333333_g348414_i0 PRJNA1115053 350231 151 1.333333 2.01333283 Halorubrum vacuolatum 63740 Archaea Archaea 41.6 0.028   NR WP_143420458.1 63740 g348414 i0 58.6 0.576158940397351 29 12 57.6 0 121 35 1372 1400 WP_143420458.1 hypothetical protein [Halorubrum vacuolatum] diamond 87 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum vacuolatum
29910196 29910196 PRJNA1115053_S_NODE_159511_length_214_cov_1.122807_g157694_i0 PRJNA1115053 159511 214 1.1228070000000001 2.40280698 Methanolinea mesophila 547055 Archaea Archaea 42 0.0477   NR WP_209673321.1 547055 g157694 i0 42.6 1.23364485981308 54 28 75.7 1 37 198 277 327 WP_209673321.1 aldo/keto reductase [Methanolinea mesophila] diamond 264 42 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanolinea Methanolinea mesophila
29973216 29973216 PRJNA1115053_S_NODE_21131_length_451_cov_7.612745_g19327_i0 PRJNA1115053 21131 451 7.612745 34.33347995 archaeon 1906665 Archaea Archaea 181 2.32e-53   NR RYG65852.1 1906665 g19327 i0 64.9 0.891352549889135 134 45 89.1 1 449 48 179 310 RYG65852.1 MAG: hypothetical protein EON64_11065 [archaeon] diamond 402 181 1 Archaea               archaeon
30573298 30573298 PRJNA1115053_S_NODE_77293_length_286_cov_4.588477_g75476_i0 PRJNA1115053 77293 286 4.588477 13.12304422 archaeon 1906665 Archaea Archaea 150 2.16e-43   NR RYG66559.1 1906665 g75476 i0 88 0.870629370629371 83 10 87.1 0 249 1 132 214 RYG66559.1 MAG: elongation factor 1-beta/delta [archaeon] diamond 249 150 1 Archaea               archaeon
30668295 30668295 PRJNA1115053_S_NODE_88113_length_272_cov_3.641921_g86296_i0 PRJNA1115053 88113 272 3.641921 9.90602512 archaeon 1906665 Archaea Archaea 87.8 1.61e-20   NR RYG60021.1 1906665 g86296 i0 68.2 1.46691176470588 66 21 72.8 0 270 73 15 80 RYG60021.1 MAG: hypothetical protein EON64_19665 [archaeon] diamond 399 87.8 1 Archaea               archaeon
30889567 30889567 PRJNA1115053_S_NODE_49714_length_337_cov_3.982993_g47897_i0 PRJNA1115053 49714 337 3.982993 13.42268641 archaeon 1906665 Archaea Archaea 124 2.5699999999999997e-32   NR RYG70257.1 1906665 g47897 i0 90.6 0.56973293768546 64 6 57 0 2 193 209 272 RYG70257.1 MAG: fatty acid oxidation complex subunit alpha FadJ, partial [archaeon] diamond 192 124 1 Archaea               archaeon
31110470 31110470 PRJNA1115053_S_NODE_104595_length_254_cov_3.559242_g102778_i0 PRJNA1115053 104595 254 3.559242 9.04047468 archaeon 1906665 Archaea Archaea 55.8 2.02e-8   NR RYY88651.1 1906665 g102778 i0 72.2 0.425196850393701 36 10 42.5 0 253 146 4 39 RYY88651.1 MAG: hypothetical protein EON63_02065 [archaeon] diamond 108 55.8 1 Archaea               archaeon
31458647 31458647 PRJNA1115053_S_NODE_90056_length_270_cov_2.145374_g88239_i0 PRJNA1115053 90056 270 2.145374 5.7925098 Methanobacterium formicicum 2162 Archaea Archaea 43.5 0.0251   NR WP_060537930.1 2162 g88239 i0 35.3 0.566666666666667 51 33 56.7 0 116 268 74 124 WP_060537930.1 glycosyltransferase family 2 protein [Methanobacterium formicicum] diamond 153 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
31679734 31679734 PRJNA1115053_S_NODE_319157_length_156_cov_2.345133_g317340_i0 PRJNA1115053 319157 156 2.345133 3.65840748 archaeon 1906665 Archaea Archaea 50.8 7.99e-6   NR RYH28930.1 1906665 g317340 i0 61.1 0.692307692307692 36 14 69.2 0 10 117 143 178 RYH28930.1 MAG: hypothetical protein EON65_10300 [archaeon] diamond 108 50.8 1 Archaea               archaeon
31996279 31996279 PRJNA1115053_S_NODE_174858_length_205_cov_3.259259_g173041_i0 PRJNA1115053 174858 205 3.259259 6.68148095 archaeon 1906665 Archaea Archaea 58.9 4.14e-8   NR RYG64343.1 1906665 g173041 i0 67.7 0.453658536585366 31 10 45.4 0 204 112 312 342 RYG64343.1 MAG: hypothetical protein EON64_14200 [archaeon] diamond 93 58.9 1 Archaea               archaeon
32281215 32281215 PRJNA1115053_S_NODE_189759_length_198_cov_2.141935_g187942_i0 PRJNA1115053 189759 198 2.141935 4.2410313 archaeon 1906665 Archaea Archaea 49.7 5.99e-6   NR RYY87895.1 1906665 g187942 i0 55.8 0.651515151515151 43 19 65.2 0 198 70 25 67 RYY87895.1 MAG: hypothetical protein EON63_03260 [archaeon] diamond 129 49.7 1 Archaea               archaeon
32745865 32745865 PRJNA1115053_S_NODE_343820_length_152_cov_0.880734_g342003_i0 PRJNA1115053 343820 152 0.880734 1.33871568 Methanobacteriati 3366610 Archaea Archaea 42.4 0.0146   NR MDB3871565.1 2026739 g342003 i0 45.8 4.69736842105263 48 21 94.7 1 151 8 102 144 MDB3871565.1 phosphonate ABC transporter, permease protein PhnE [Methanobacteriota archaeon] diamond 714 42.4 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
32754704 32754704 PRJNA1115053_S_NODE_79920_length_283_cov_1.600000_g78103_i0 PRJNA1115053 79920 283 1.6 4.528 Halorarum halophilum 2743090 Archaea Archaea 45.4 0.00655   NR WP_179170698.1 2743090 g78103 i0 38.6 0.879858657243816 83 46 85.9 3 243 1 229 308 WP_179170698.1 sensor histidine kinase [Halorarum halophilum] diamond 249 45.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum halophilum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;