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contig_metadata

17 rows where bioproject = "PRJNA1115053", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 17 ✖

tax_phylum 1

  • Myxococcota · 17 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1115053 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1503281 1503281 PRJNA1115053_S_NODE_41862_length_358_cov_1.857143_g40045_i0 PRJNA1115053 41862 358 1.857143 6.64857194 Archangium violaceum 83451 Bacteria Bacteria 322 2.34e-83   NTclustered gi|2579675135|gb|CP043493.1| 83451 g40045 i0 83.196 212.301675977654 363 50 100 9 1 358 5180967 5181323 Archangium violaceum strain Cbvi 34 chromosome, complete genome blastn 76004 322 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
11702806 11702806 PRJNA1115053_S_NODE_171250_length_207_cov_2.268293_g169433_i0 PRJNA1115053 171250 207 2.268293 4.69536651 Pendulispora albinea 2741071 Bacteria Bacteria 241 3.6e-59   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g169433 i0 87.805 126.009661835749 205 25 99 0 1 205 3588112 3587908 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 26084 241 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
15051844 15051844 PRJNA1115053_S_NODE_126152_length_236_cov_1.492228_g124335_i0 PRJNA1115053 126152 236 1.492228 3.52165808 Sorangium 39643 Bacteria Bacteria 226 1.18e-54   NTclustered gi|1566478966|gb|CP012672.1| 56 g124335 i0 84.848 90.0889830508475 231 27 95 7 12 236 6778774 6778546 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 21261 226 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
18074086 18074086 PRJNA1115053_S_NODE_10415_length_581_cov_22.996283_g8786_i0 PRJNA1115053 10415 581 22.996283 133.60840423 Haliangium ochraceum 80816 Bacteria Bacteria 399 1.7799999999999996e-106   NTclustered gi|262076673|gb|CP001804.1| 502025 g8786 i0 80 134.695352839931 570 90 96 19 1 556 2901276 2900717 Haliangium ochraceum DSM 14365, complete genome blastn 78258 399 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
26679011 26679011 PRJNA1115053_S_NODE_281261_length_166_cov_1.853659_g279444_i0 PRJNA1115053 281261 166 1.853659 3.07707394 Pseudomonadati 3379134 Bacteria Bacteria 41.2 0.0442   NR MDR1125858.1 2026735 g279444 i0 39 1.59036144578313 41 25 74.1 0 36 158 200 240 MDR1125858.1 glycosyltransferase [Deltaproteobacteria bacterium] diamond 264 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26846717 26846717 PRJNA1115053_S_NODE_311941_length_158_cov_1.669565_g310124_i0 PRJNA1115053 311941 158 1.669565 2.6379127000000002 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 46.6 5.04e-4   NR MCK5798255.1 2026735 g310124 i0 63 0.512658227848101 27 10 51.3 0 40 120 273 299 MCK5798255.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 81 46.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27478804 27478804 PRJNA1115053_S_NODE_128543_length_234_cov_1.759162_g126726_i0 PRJNA1115053 128543 234 1.759162 4.11643908 Myxococcales bacterium 2026763 Bacteria Bacteria 42.4 0.0394   NR MDH3842767.1 2026763 g126726 i0 43.4 0.67948717948718 53 27 66.7 2 41 196 94 144 MDH3842767.1 hypothetical protein [Myxococcales bacterium] diamond 159 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27542025 27542025 PRJNA1115053_S_NODE_260904_length_172_cov_1.635659_g259087_i0 PRJNA1115053 260904 172 1.635659 2.81333348 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.1 5.88e-8   NR MBI3542247.1 2026735 g259087 i0 81.1 0.645348837209302 37 6 64.5 1 112 2 1 36 MBI3542247.1 transposase [Deltaproteobacteria bacterium] diamond 111 55.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28489234 28489234 PRJNA1115053_S_NODE_338247_length_153_cov_0.872727_g336430_i0 PRJNA1115053 338247 153 0.872727 1.33527231 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0058   NR MDP2342693.1 2026735 g336430 i0 47.4 0.745098039215686 38 20 74.5 0 35 148 344 381 MDP2342693.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 114 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28741782 28741782 PRJNA1115053_S_NODE_355487_length_150_cov_2.242991_g353670_i0 PRJNA1115053 355487 150 2.242991 3.3644865 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 60.5 5.65e-9   NR HYG68651.1 2510643 g353670 i0 56.3 1.94 48 21 96 0 3 146 124 171 HYG68651.1 DUF2586 family protein [Anaeromyxobacteraceae bacterium] diamond 291 60.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
29553525 29553525 PRJNA1115053_S_NODE_145310_length_222_cov_2.681564_g143493_i0 PRJNA1115053 145310 222 2.681564 5.95307208 Pseudomonadati 3379134 Bacteria Bacteria 43.1 0.0199   NR WP_075007115.1 41 g143493 i0 38.1 1.7027027027027 63 39 85.1 0 208 20 76 138 WP_075007115.1 hypothetical protein [Stigmatella aurantiaca] diamond 378 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
29751878 29751878 PRJNA1115053_S_NODE_169011_length_208_cov_3.575758_g167194_i0 PRJNA1115053 169011 208 3.575758 7.43757664 Nannocystis pusilla 889268 Bacteria Bacteria 40.4 0.0481   NR WP_267771976.1 889268 g167194 i0 41.5 0.764423076923077 53 30 76.4 1 168 10 49 100 WP_267771976.1 protein kinase [Nannocystis pusilla] diamond 159 40.4 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis pusilla
31300339 31300339 PRJNA1115053_S_NODE_278235_length_167_cov_1.548387_g276418_i0 PRJNA1115053 278235 167 1.548387 2.58580629 Myxococcota bacterium 2818507 Bacteria Bacteria 41.2 0.0456   NR MCH2409717.1 2818507 g276418 i0 47.5 0.718562874251497 40 20 71.9 1 140 21 183 221 MCH2409717.1 alpha/beta hydrolase [Myxococcota bacterium] diamond 120 41.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31585219 31585219 PRJNA1115053_S_NODE_82916_length_279_cov_1.830508_g81099_i0 PRJNA1115053 82916 279 1.830508 5.10711732 Kofleriaceae bacterium 2212474 Bacteria Bacteria 52 2.94e-5   NR HEY5935137.1 2212474 g81099 i0 34 1.01075268817204 94 58 96.8 1 2 271 185 278 HEY5935137.1 hypothetical protein [Kofleriaceae bacterium] diamond 282 52 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31711519 31711519 PRJNA1115053_S_NODE_121437_length_240_cov_0.974619_g119620_i0 PRJNA1115053 121437 240 0.974619 2.3390856 Polyangiaceae bacterium 2268199 Bacteria Bacteria 42.7 0.0347   NR MET0794252.1 2268199 g119620 i0 41 0.7625 61 34 73.8 1 236 60 224 284 MET0794252.1 dockerin type I domain-containing protein [Polyangiaceae bacterium] diamond 183 42.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31774681 31774681 PRJNA1115053_S_NODE_59397_length_316_cov_2.813187_g57580_i0 PRJNA1115053 59397 316 2.813187 8.88967092 Kofleriaceae bacterium 2212474 Bacteria Bacteria 143 1.32e-38   NR NVB77927.1 2212474 g57580 i0 82.4 2.38291139240506 85 15 80.7 0 314 60 334 418 NVB77927.1 NAD-dependent epimerase/dehydratase family protein [Kofleriaceae bacterium] diamond 753 143 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32113948 32113948 PRJNA1115053_S_NODE_124338_length_237_cov_2.505155_g122521_i0 PRJNA1115053 124338 237 2.505155 5.93721735 Polyangiales 3031712 Bacteria Bacteria 42.4 0.0433   NR MAT26778.1 2024858 g122521 i0 34.2 1.84810126582278 73 46 89.9 1 227 15 115 187 MAT26778.1 hypothetical protein [Sandaracinus sp.] diamond 438 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;