RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1115053" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1024365 1024365 PRJNA1115053_S_NODE_242461_length_178_cov_1.422222_g240644_i0 PRJNA1115053 242461 178 1.422222 2.53155516 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 276 8.210000000000001e-70   NTclustered gi|219524789|gb|EU709152.1| 175275 g240644 i0 98.71 85.9887640449438 155 2 87 0 1 155 683 529 Uncultured cercozoan isolate HetPan20 18S ribosomal RNA gene, partial sequence blastn 15306 276 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
4052698 4052698 PRJNA1115053_S_NODE_245704_length_177_cov_1.328358_g243887_i0 PRJNA1115053 245704 177 1.328358 2.35119366 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 327 2.2199999999999996e-85   NTclustered gi|224996436|gb|FJ654268.1| 188950 g243887 i0 100 90.0169491525424 177 0 100 0 1 177 534 710 Bodomorpha minima 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15933 327 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;