RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1115053", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA1115053 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11227642 11227642 PRJNA1115053_S_NODE_16509_length_491_cov_4.412946_g14729_i0 PRJNA1115053 16509 491 4.412946 21.66756486 root 1 Root_unresolved Root_unresolved 56.5 0.004   NTclustered gi|779731694|gb|CP010430.1| 35554 g14729 i0 100 0.977596741344195 30 0 6 0 22 51 2076907 2076936 Geobacter sulfurreducens strain AM-1 genome blastn 480 56.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
15525945 15525945 PRJNA1115053_S_NODE_141793_length_225_cov_1.054945_g139976_i0 PRJNA1115053 141793 225 1.054945 2.37362625 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 87.9 5.48e-13   NTclustered gi|2621786209|emb|OY782667.1| 2049043 g139976 i0 85.882 14.8088888888889 85 8 37 4 142 225 1361086 1361005 MAG: Desulfovibrionaceae bacterium isolate c63d6e66-0b86-4b38-bb75-751bde387f56 genome assembly, chromosome: 1 blastn 3332 87.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
21899956 21899956 PRJNA1115053_S_NODE_129258_length_233_cov_4.042105_g127441_i0 PRJNA1115053 129258 233 4.042105 9.41810465 Desulfovibrio aminophilus 81425 Bacteria Bacteria 300 6.74e-77   NTclustered gi|2908463109|gb|CP168306.1| 81425 g127441 i0 90.086 245.536480686695 232 22 99 1 3 233 222640 222409 MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome blastn 57210 300 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aminophilus
27406973 27406973 PRJNA1115053_S_NODE_329763_length_154_cov_1.297297_g327946_i0 PRJNA1115053 329763 154 1.297297 1.99783738 Desulfovibrio 872 Bacteria Bacteria 63.5 5.05e-10   NR WP_027174739.1 872 g327946 i0 52.8 5.16233766233766 53 23 99.4 1 154 2 362 414 WP_027174739.1 MULTISPECIES: aminopeptidase [Desulfovibrio] diamond 795 63.9 0.993740219092332 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio  
27691253 27691253 PRJNA1115053_S_NODE_172084_length_207_cov_1.402439_g170267_i0 PRJNA1115053 172084 207 1.402439 2.90304873 Syntrophobacter 29526 Bacteria Bacteria 65.5 2.15e-10   NR WP_041439928.1 119484 g170267 i0 41.8 1.94202898550725 67 37 97.1 1 2 202 333 397 WP_041439928.1 hypothetical protein [Syntrophobacter fumaroxidans] diamond 402 65.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans
30352923 30352923 PRJNA1115053_S_NODE_171132_length_207_cov_2.493902_g169315_i0 PRJNA1115053 171132 207 2.493902 5.16237714 Syntrophobacteraceae bacterium 2052185 Bacteria Bacteria 44.3 0.00418   NR MDR3556630.1 2052185 g169315 i0 40.5 0.536231884057971 37 22 53.6 0 63 173 111 147 MDR3556630.1 ubiquinol-cytochrome c reductase iron-sulfur subunit [Syntrophobacteraceae bacterium] diamond 111 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae   Syntrophobacteraceae bacterium
31300344 31300344 PRJNA1115053_S_NODE_349235_length_151_cov_1.333333_g347418_i0 PRJNA1115053 349235 151 1.333333 2.01333283 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 40.8 0.0497   NR MEJ2158404.1 2049433 g347418 i0 38.5 0.774834437086093 39 24 77.5 0 15 131 57 95 MEJ2158404.1 uroporphyrinogen decarboxylase family protein [Desulfobacteraceae bacterium] diamond 117 40.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
32754697 32754697 PRJNA1115053_S_NODE_179020_length_203_cov_2.700000_g177203_i0 PRJNA1115053 179020 203 2.7 5.481 Desulfobacterales bacterium 2044940 Bacteria Bacteria 42.7 0.0224   NR MEX1346713.1 2044940 g177203 i0 48.8 0.635467980295567 43 20 60.6 1 35 157 333 375 MEX1346713.1 PilC/PilY family type IV pilus protein [Desulfobacterales bacterium] diamond 129 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;