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contig_metadata

16 rows where bioproject = "PRJNA1115053", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 16 ✖

tax_kingdom 1

  • Pseudomonadati · 16 ✖

bioproject 1

  • PRJNA1115053 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
224912 224912 PRJNA1115053_S_NODE_2081_length_1111_cov_28.750000_g1216_i2 PRJNA1115053 2081 1111 28.75 319.4125 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 1581 0   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g1216 i2 94 116.740774077408 1050 54 94 9 26 1071 1292260 1293304 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 129699 1581 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
1499208 1499208 PRJNA1115053_S_NODE_1862_length_1170_cov_29.196983_g1216_i0 PRJNA1115053 1862 1170 29.196983 341.6047011 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 1633 0   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g1216 i0 92.509 121.223931623932 1148 74 98 11 26 1168 1292260 1293400 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 141832 1633 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
5325517 5325517 PRJNA1115053_S_NODE_108325_length_251_cov_1.836538_g106508_i0 PRJNA1115053 108325 251 1.836538 4.60971038 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 121 6.149999999999999e-23   NTclustered gi|469929247|gb|CP003537.1| 1184267 g106508 i0 91.86 14.4501992031873 86 7 34 0 162 247 1628941 1628856 Bdellovibrio exovorus JSS, complete genome blastn 3627 121 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
7877580 7877580 PRJNA1115053_S_NODE_197307_length_195_cov_1.578947_g195490_i0 PRJNA1115053 197307 195 1.578947 3.07894665 Peredibacter starrii 28202 Bacteria Bacteria 195 2.65e-45   NTclustered gi|2631252187|gb|CP139487.1| 28202 g195490 i0 87.574 2.57948717948718 169 19 87 2 1 169 454843 455009 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 503 195 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
10428089 10428089 PRJNA1115053_S_NODE_1909_length_1155_cov_31.101619_g1216_i1 PRJNA1115053 1909 1155 31.101619 359.22369945 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 1971 0   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g1216 i1 98.142 149.506493506494 1130 21 98 0 1 1130 1293389 1292260 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 172680 1971 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
18079240 18079240 PRJNA1115053_S_NODE_32615_length_390_cov_9.132565_g30802_i0 PRJNA1115053 32615 390 9.132565 35.6170035 Peredibacter starrii 28202 Bacteria Bacteria 664 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g30802 i0 97.436 85.6102564102564 390 9 100 1 1 390 512145 512533 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 33388 664 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
18876252 18876252 PRJNA1115053_S_NODE_319375_length_156_cov_2.123894_g317558_i0 PRJNA1115053 319375 156 2.123894 3.31327464 Peredibacter 263370 Bacteria Bacteria 278 1.95e-70   NTclustered gi|2631252187|gb|CP139487.1| 28202 g317558 i0 98.718 126.134615384615 156 2 100 0 1 156 512707 512862 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 19677 278 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
18876335 18876335 PRJNA1115053_S_NODE_37035_length_373_cov_12.145455_g35220_i0 PRJNA1115053 37035 373 12.145455 45.30254715 Peredibacter 263370 Bacteria Bacteria 549 1.0299999999999996e-151   NTclustered gi|2631252187|gb|CP139487.1| 28202 g35220 i0 95.115 87.4477211796247 348 17 93 0 26 373 508831 509178 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 32618 549 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24449622 24449622 PRJNA1115053_S_NODE_143660_length_223_cov_3.305556_g141843_i0 PRJNA1115053 143660 223 3.305556 7.37138988 Peredibacter starrii 28202 Bacteria Bacteria 268 1.81e-67   NTclustered gi|2631252187|gb|CP139487.1| 28202 g141843 i0 88.341 1 223 26 100 0 1 223 2936719 2936497 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 223 268 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
26973024 26973024 PRJNA1115053_S_NODE_134542_length_230_cov_1.149733_g132725_i0 PRJNA1115053 134542 230 1.149733 2.6443859 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 149 6.95e-44   NR HEY8278323.1 3034175 g132725 i0 97.3 0.965217391304348 74 2 96.5 0 228 7 116 189 HEY8278323.1 TraR/DksA C4-type zinc finger protein [Bdellovibrionota bacterium] diamond 222 149 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28804688 28804688 PRJNA1115053_S_NODE_50628_length_335_cov_2.794521_g48811_i0 PRJNA1115053 50628 335 2.794521 9.36164535 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 67 1.73e-10   NR HEY8278372.1 3034175 g48811 i0 52.4 0.564179104477612 63 30 56.4 0 333 145 8 70 HEY8278372.1 cell envelope integrity protein TolA [Bdellovibrionota bacterium] diamond 189 67 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28985700 28985700 PRJNA1115053_S_NODE_219828_length_186_cov_1.342657_g218011_i0 PRJNA1115053 219828 186 1.342657 2.49734202 Peredibacter 263370 Bacteria Bacteria 102 5.57e-24   NR WP_321392745.1 28202 g218011 i0 83.6 3.95161290322581 61 10 98.4 0 184 2 57 117 WP_321392745.1 FecR family protein [Peredibacter starrii] diamond 735 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
29593899 29593899 PRJNA1115053_S_NODE_291470_length_163_cov_2.683333_g289653_i0 PRJNA1115053 291470 163 2.683333 4.37383279 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 83.6 4.62e-17   NR MFP5385936.1 3058048 g289653 i0 75.5 0.975460122699387 53 13 97.5 0 161 3 318 370 MFP5385936.1 aldehyde dehydrogenase family protein [Bacteriovoracia bacterium] diamond 159 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
32566041 32566041 PRJNA1115053_S_NODE_110359_length_249_cov_1.985437_g108542_i0 PRJNA1115053 110359 249 1.985437 4.94373813 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.1 4.44e-9   NR HEX4924822.1 2053517 g108542 i0 46.3 0.807228915662651 67 34 78.3 1 53 247 4 70 HEX4924822.1 GNAT family N-acetyltransferase [Bdellovibrionales bacterium] diamond 201 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32597373 32597373 PRJNA1115053_S_NODE_74140_length_291_cov_2.322581_g72323_i0 PRJNA1115053 74140 291 2.322581 6.75871071 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 77 4.65e-14   NR HEY8278704.1 3034175 g72323 i0 48 1.01030927835052 98 41 91.8 2 285 19 107 203 HEY8278704.1 hypothetical protein [Bdellovibrionota bacterium] diamond 294 77 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32628555 32628555 PRJNA1115053_S_NODE_81060_length_281_cov_2.983193_g79243_i0 PRJNA1115053 81060 281 2.983193 8.38277233 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 93.6 6.77e-21   NR HEY8279801.1 3034175 g79243 i0 51.1 0.96085409252669 90 40 96.1 1 12 281 15 100 HEY8279801.1 tetratricopeptide repeat protein [Bdellovibrionota bacterium] diamond 270 93.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;