RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA1115053", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 15 ✖

tax_kingdom 1

  • Metazoa · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA1115053 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
222902 222902 PRJNA1115053_S_NODE_125041_length_237_cov_1.175258_g123224_i0 PRJNA1115053 125041 237 1.175258 2.78536146 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g123224 i0 100 0.118143459915612 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
2774335 2774335 PRJNA1115053_S_NODE_154203_length_217_cov_1.379310_g152386_i0 PRJNA1115053 154203 217 1.37931 2.9931027 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.019   NTclustered gi|1557394408|emb|LR031564.1| 45931 g152386 i0 100 0.129032258064516 28 0 13 0 190 217 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4051636 4051636 PRJNA1115053_S_NODE_200524_length_194_cov_0.953642_g198707_i0 PRJNA1115053 200524 194 0.953642 1.85006548 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g198707 i0 100 0.144329896907216 28 0 14 0 167 194 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
5328085 5328085 PRJNA1115053_S_NODE_214325_length_188_cov_1.351724_g212508_i0 PRJNA1115053 214325 188 1.351724 2.54124112 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g212508 i0 96.97 0.175531914893617 33 0 18 1 156 188 50 19 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 33 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
11704310 11704310 PRJNA1115053_S_NODE_234190_length_181_cov_1.043478_g232373_i0 PRJNA1115053 234190 181 1.043478 1.88869518 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g232373 i0 92.308 0.215469613259669 39 1 22 1 143 181 59 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 39 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13777526 13777526 PRJNA1115053_S_NODE_128131_length_234_cov_2.685864_g126314_i0 PRJNA1115053 128131 234 2.685864 6.28492176 Metazoa 33208 Nematoda Nematoda 137 5.62e-28   NTclustered gi|158821894|gb|EU195958.1| 473172 g126314 i0 93.478 39.542735042735 92 6 39 0 143 234 1892 1983 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 9253 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
14254319 14254319 PRJNA1115053_S_NODE_223792_length_184_cov_2.531915_g221975_i0 PRJNA1115053 223792 184 2.531915 4.6587236 Poteriostomum imparidentatum 54000 Nematoda Nematoda 54.7 0.004   NTclustered gi|1206251681|ref|NC_035005.1| 54000 g221975 i0 94.286 0.190217391304348 35 2 19 0 18 52 8087 8053 Poteriostomum imparidentatum isolate DQPIM1 mitochondrion, complete genome blastn 35 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Poteriostomum Poteriostomum imparidentatum
16801627 16801627 PRJNA1115053_S_NODE_188354_length_199_cov_1.416667_g186537_i0 PRJNA1115053 188354 199 1.416667 2.81916733 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.005   NTclustered gi|1557394408|emb|LR031564.1| 45931 g186537 i0 100 0.14572864321608 29 0 15 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18074530 18074530 PRJNA1115053_S_NODE_122675_length_239_cov_0.979592_g120858_i0 PRJNA1115053 122675 239 0.979592 2.34122488 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g120858 i0 100 0.117154811715481 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23178952 23178952 PRJNA1115053_S_NODE_279619_length_167_cov_1.161290_g277802_i0 PRJNA1115053 279619 167 1.16129 1.9393543 Trichinella spiralis 6334 Nematoda Nematoda 52.8 0.014   NTclustered gi|104295119|gb|AC187042.1| 6334 g277802 i0 100 0.167664670658683 28 0 17 0 25 52 103869 103896 Trichinella spiralis chromosome UNK clone TS195-23H12, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
27352736 27352736 PRJNA1115053_S_NODE_67823_length_301_cov_2.046512_g66006_i0 PRJNA1115053 67823 301 2.046512 6.16000112 Trichuris suis 68888 Nematoda Nematoda 60.1 5.07e-8   NR KHJ39930.1 68888 g66006 i0 58 1.94352159468439 50 21 49.8 0 68 217 244 293 KHJ39930.1 hypothetical protein D918_10017 [Trichuris suis] diamond 585 60.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30036472 30036472 PRJNA1115053_S_NODE_91951_length_268_cov_1.720000_g90134_i0 PRJNA1115053 91951 268 1.72 4.6096 Steinernema hermaphroditum 289476 Nematoda Nematoda 43.1 0.0387   NR KAK0403860.1 289476 g90134 i0 44.6 1.25373134328358 56 20 50.4 1 178 44 384 439 KAK0403860.1 hypothetical protein QR680_017162 [Steinernema hermaphroditum] diamond 336 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
30605035 30605035 PRJNA1115053_S_NODE_198513_length_194_cov_3.728477_g196696_i0 PRJNA1115053 198513 194 3.728477 7.23324538 Pristionchus pacificus 54126 Nematoda Nematoda 42 0.025   NR KAF8363706.1 54126 g196696 i0 42.9 0.649484536082474 42 24 64.9 0 166 41 58 99 KAF8363706.1 hypothetical protein PRIPAC_90629 [Pristionchus pacificus] diamond 126 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
30826251 30826251 PRJNA1115053_S_NODE_323654_length_155_cov_2.035714_g321837_i0 PRJNA1115053 323654 155 2.035714 3.1553567 Trichuris suis 68888 Nematoda Nematoda 50.1 2.9e-5   NR KFD61048.1 68888 g321837 i0 63.3 0.580645161290323 30 11 58.1 0 35 124 34 63 KFD61048.1 hypothetical protein M514_08442 [Trichuris suis] diamond 90 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32659978 32659978 PRJNA1115053_S_NODE_263560_length_171_cov_2.250000_g261743_i0 PRJNA1115053 263560 171 2.25 3.8475 Enterobius vermicularis 51028 Nematoda Nematoda 42.4 0.019   NR VDD88179.1 51028 g261743 i0 40.5 0.736842105263158 42 25 73.7 0 3 128 2 43 VDD88179.1 unnamed protein product [Enterobius vermicularis] diamond 126 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;