RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1115053", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1115053 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30596032 30596032 PRJNA1115053_S_NODE_110033_length_249_cov_3.213592_g108216_i0 PRJNA1115053 110033 249 3.213592 8.00184408 Fungi 4751 Fungi Fungi 63.9 1.32e-9   NR XJO76014.1 109871 g108216 i0 50 3.69879518072289 52 26 62.7 0 247 92 414 465 XJO76014.1 hypothetical protein BDV3_006594 [Batrachochytrium dendrobatidis] diamond 921 64.3 0.993779160186625 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
30605049 30605049 PRJNA1115053_S_NODE_79093_length_284_cov_2.004149_g77276_i0 PRJNA1115053 79093 284 2.004149 5.69178316 Boothiomyces macroporosus 261099 Fungi Fungi 49.3 2.89e-4   NR KAJ3256689.1 261099 g77276 i0 77.8 0.285211267605634 27 6 28.5 0 173 93 331 357 KAJ3256689.1 hypothetical protein HK103_005184 [Boothiomyces macroporosus] diamond 81 49.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Terramycetaceae Boothiomyces Boothiomyces macroporosus
31711532 31711532 PRJNA1115053_S_NODE_93497_length_266_cov_2.354260_g91680_i0 PRJNA1115053 93497 266 2.35426 6.2623316000000004 Cladochytrium tenue 1604274 Fungi Fungi 45.4 0.00509   NR KAJ1569132.1 1604274 g91680 i0 71.4 30.6541353383459 28 8 31.6 0 167 250 65 92 KAJ1569132.1 Splicing factor 3A subunit 2 [Cladochytrium tenue] diamond 8154 45.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium tenue

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;