RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1115053", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1115053 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1024550 1024550 PRJNA1115053_S_NODE_34681_length_382_cov_4.657817_g32867_i0 PRJNA1115053 34681 382 4.657817 17.79286094 Fimbriimonas 1005038 Bacteria Bacteria 518 2.99e-142   NTclustered gi|663071213|gb|CP007139.1| 661478 g32867 i0 91.146 45.5026178010471 384 31 100 2 1 382 27946 28328 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 17382 518 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
19352231 19352231 PRJNA1115053_S_NODE_267416_length_170_cov_1.889764_g265599_i0 PRJNA1115053 267416 170 1.889764 3.2125988 Capsulimonas corticalis 2219043 Bacteria Bacteria 65.8 1.83e-6   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g265599 i0 97.368 0.894117647058824 38 1 22 0 1 38 595336 595299 Capsulimonas corticalis AX-7 DNA, complete genome blastn 152 65.8 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
26719443 26719443 PRJNA1115053_S_NODE_266401_length_170_cov_4.629921_g264584_i0 PRJNA1115053 266401 170 4.629921 7.8708657 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 41.6 0.0356   NR HLK58045.1 2739509 g264584 i0 43.2 0.776470588235294 44 21 70.6 1 9 128 213 256 HLK58045.1 stage II sporulation protein M [Chthonomonadaceae bacterium] diamond 132 41.6 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
32091174 32091174 PRJNA1115053_S_NODE_289278_length_164_cov_1.495868_g287461_i0 PRJNA1115053 289278 164 1.495868 2.45322352 Armatimonadota bacterium 2033014 Bacteria Bacteria 57 1.17e-7   NR MEY4914705.1 2033014 g287461 i0 61.5 1.42682926829268 39 15 71.3 0 150 34 338 376 MEY4914705.1 hypothetical protein [Armatimonadota bacterium] diamond 234 57 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;