RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1115053", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5325940 5325940 PRJNA1115053_S_NODE_125225_length_236_cov_17.502591_g123408_i0 PRJNA1115053 125225 236 17.502591 41.30611476 uncultured delta proteobacterium 34034 Bacteria Bacteria 414 2.34e-111   NTclustered gi|315177282|gb|HQ532522.1| 34034 g123408 i0 98.305 96.4025423728814 236 4 100 0 1 236 447 212 Uncultured delta proteobacterium clone CR011E8 16S ribosomal RNA gene, partial sequence blastn 22751 414 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15531783 15531783 PRJNA1115053_S_NODE_67673_length_301_cov_2.844961_g65856_i0 PRJNA1115053 67673 301 2.844961 8.56333261 uncultured delta proteobacterium 34034 Bacteria Bacteria 435 2.38e-117   NTclustered gi|374854163|dbj|AP011765.1| 34034 g65856 i0 92.715 133.667774086379 302 21 100 1 1 301 13195 12894 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 40234 435 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;