RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1115053", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2300060 2300060 PRJNA1115053_S_NODE_64042_length_307_cov_4.568182_g62225_i0 PRJNA1115053 64042 307 4.568182 14.02431874 Chlamydiota bacterium 2081524 Bacteria Bacteria 94.4 3.59e-22   NR MBM3198081.1 2081524 g62225 i0 91.7 2.34527687296417 48 4 46.9 0 162 305 1 48 MBM3198081.1 50S ribosomal protein L17 [Chlamydiota bacterium] diamond 720 94.4 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28710352 28710352 PRJNA1115053_S_NODE_118627_length_242_cov_1.447236_g116810_i0 PRJNA1115053 118627 242 1.447236 3.50231112 Chlamydia trachomatis 813 Bacteria Bacteria 138 4.89e-36   NR CRH84899.1 813 g116810 i0 77.5 1.98347107438017 80 18 99.2 0 241 2 46 125 CRH84899.1 phage prohead protease%2C HK97 family [Chlamydia trachomatis] diamond 480 138 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;