RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1115053", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1115053 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27067923 27067923 PRJNA1115053_S_NODE_141422_length_225_cov_1.565934_g139605_i0 PRJNA1115053 141422 225 1.565934 3.5233515 Gemmatimonas sp. 1962908 Bacteria Bacteria 42.7 0.0282   NR MBA4071598.1 1962908 g139605 i0 42.4 0.786666666666667 59 27 77.3 2 27 200 43 95 MBA4071598.1 hypothetical protein [Gemmatimonas sp.] diamond 177 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
27130814 27130814 PRJNA1115053_S_NODE_130282_length_233_cov_1.247368_g128465_i0 PRJNA1115053 130282 233 1.247368 2.90636744 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.00934   NR HZM25943.1 2448054 g128465 i0 38.3 0.605150214592275 47 27 57.9 1 50 184 314 360 HZM25943.1 hypothetical protein [Gemmatimonadales bacterium] diamond 141 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27952475 27952475 PRJNA1115053_S_NODE_282965_length_166_cov_1.170732_g281148_i0 PRJNA1115053 282965 166 1.170732 1.94341512 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 40.8 0.0277   NR HUL02459.1 2448054 g281148 i0 32 0.903614457831325 50 34 90.4 0 150 1 4 53 HUL02459.1 hypothetical protein [Gemmatimonadales bacterium] diamond 150 40.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28385493 28385493 PRJNA1115053_S_NODE_271966_length_169_cov_1.142857_g270149_i0 PRJNA1115053 271966 169 1.142857 1.93142833 Pseudomonadati 3379134 Bacteria Bacteria 41.2 0.0464   NR WP_325312553.1 2029185 g270149 i0 51.4 1.24260355029586 35 17 62.1 0 122 18 90 124 WP_325312553.1 cation diffusion facilitator family transporter [Longimicrobium sp.] diamond 210 41.6 0.990384615384615 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32281220 32281220 PRJNA1115053_S_NODE_282359_length_166_cov_1.227642_g280542_i0 PRJNA1115053 282359 166 1.227642 2.03788572 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.6 0.0335   NR MBR9989436.1 2026742 g280542 i0 59.3 0.487951807228916 27 11 48.8 0 47 127 205 231 MBR9989436.1 phosphatase PAP2 family protein [Gemmatimonadota bacterium] diamond 81 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32471067 32471067 PRJNA1115053_S_NODE_244539_length_177_cov_2.149254_g242722_i0 PRJNA1115053 244539 177 2.149254 3.80417958 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 41.6 0.0402   NR HKN68494.1 2026741 g242722 i0 48.8 0.728813559322034 43 22 72.9 0 43 171 49 91 HKN68494.1 AraC family transcriptional regulator [Gemmatimonadaceae bacterium] diamond 129 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;