RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1115053", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1115053 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2776604 2776604 PRJNA1115053_S_NODE_25203_length_425_cov_7.044503_g23394_i0 PRJNA1115053 25203 425 7.044503 29.93913775 Karpovia croatica 2925417 Root_unresolved Root_unresolved 87.9 1.12e-12   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g23394 i0 88 12.0094117647059 75 8 18 1 1 75 6093 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5104 87.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
9157413 9157413 PRJNA1115053_S_NODE_84988_length_276_cov_2.991416_g83171_i0 PRJNA1115053 84988 276 2.991416 8.25630816 Thecamonas trahens 529818 Root_unresolved Root_unresolved 198 3.08e-46   NTclustered gi|923119727|ref|XM_013897883.1| 461836 g83171 i0 83.333 54.3913043478261 216 34 78 2 1 215 178 392 Thecamonas trahens ATCC 50062 ubiquitin-60S ribosomal protein L40 (AMSG_10625), partial mRNA blastn 15012 198 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;