RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1113956" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1113956 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26751106 26751106 PRJNA1113956_P_NODE_6141_length_660_cov_3.546848_g5819_i0 PRJNA1113956 6141 660 3.546848 23.4091968 Candidatus Culexarchaeum yellowstonense 2928963 Archaea Archaea 172 5.07e-50   NR MCR6668762.1 2928963 g5819 i0 44.2 1.79090909090909 197 109 89.5 1 607 17 4 199 MCR6668762.1 RNA 3'-terminal phosphate cyclase [Candidatus Culexarchaeum yellowstonense] diamond 1182 172 1 Archaea   Thermoproteati Candidatus Culexarchaeota Candidatus Culexarchaeia Candidatus Culexarchaeles Candidatus Culexarchaeaceae Candidatus Culexarchaeum Candidatus Culexarchaeum yellowstonense
28385483 28385483 PRJNA1113956_P_NODE_21506_length_245_cov_0.895349_g21166_i0 PRJNA1113956 21506 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 106 2.74e-26   NR WP_095642831.1 1036679 g21166 i0 81.4 4.33469387755102 59 11 72.2 0 1 177 184 242 WP_095642831.1 AAA family ATPase [Methanosarcina spelaei] diamond 1062 107 0.990654205607477 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina spelaei
32186147 32186147 PRJNA1113956_P_NODE_8338_length_513_cov_3.572727_g8001_i0 PRJNA1113956 8338 513 3.572727 18.32808951 Candidatus Aenigmatarchaeota archaeon 3121606 Archaea Archaea 48.1 0.00571   NR RLJ00689.1 3121606 g8001 i0 33 0.532163742690059 91 53 50.9 2 155 415 1 87 RLJ00689.1 MAG: TraB family protein [Candidatus Aenigmatarchaeota archaeon] diamond 273 48.1 1 Archaea   Nanobdellati Candidatus Aenigmatarchaeota         Candidatus Aenigmatarchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;