RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1113956" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1113956 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18073583 18073583 PRJNA1113956_P_NODE_18015_length_272_cov_1.547739_g17675_i0 PRJNA1113956 18015 272 1.547739 4.20985008 Helicobacter pylori 210 Bacteria Bacteria 52.8 0.025   NTclustered gi|2641984471|gb|CP079313.1| 210 g17675 i0 100 1.75 28 0 10 0 216 243 112856 112883 Helicobacter pylori strain HpGP-SPA-012 chromosome, complete genome blastn 476 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
26624754 26624754 PRJNA1113956_P_NODE_11181_length_402_cov_1.841945_g10841_i0 PRJNA1113956 11181 402 1.841945 7.4046189 Sulfurimonadaceae bacterium 2771476 Bacteria Bacteria 57.4 5e-7   NR MDH5465436.1 2771476 g10841 i0 38.5 0.582089552238806 78 39 58.2 1 261 28 2 70 MDH5465436.1 NUDIX domain-containing protein [Sulfurimonadaceae bacterium] diamond 234 57.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae   Sulfurimonadaceae bacterium
29815133 29815133 PRJNA1113956_P_NODE_13731_length_339_cov_1.868421_g13391_i0 PRJNA1113956 13731 339 1.868421 6.33394719 Campylobacterota bacterium 2026809 Bacteria Bacteria 47.4 0.00251   NR RLA69571.1 2026809 g13391 i0 33.6 1 113 60 92.9 4 317 3 321 426 RLA69571.1 MAG: hypothetical protein DRG24_08250 [Campylobacterota bacterium] diamond 339 47.4 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;