RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1113956", tax_phylum = "Armatimonadota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1113956 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15524583 15524583 PRJNA1113956_P_NODE_21473_length_245_cov_0.895349_g21133_i0 PRJNA1113956 21473 245 0.895349 2.19360505 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 252 2.0299999999999998e-62   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g21133 i0 85.246 0.995918367346939 244 36 99 0 2 245 2857985 2857742 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 244 252 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
29026221 29026221 PRJNA1113956_P_NODE_19948_length_250_cov_0.870056_g19608_i0 PRJNA1113956 19948 250 0.870056 2.17514 Armatimonadetes bacterium DC 1661583 Bacteria Bacteria 147 2.8e-42   NR CUU38120.1 1661583 g19608 i0 98.8 0.984 82 1 98.4 0 3 248 113 194 CUU38120.1 16S rRNA (guanine527-N7)-methyltransferase [Armatimonadetes bacterium DC] diamond 246 147 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium DC

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;