RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1113956" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA1113956 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6126806 6126806 PRJNA1113956_P_NODE_22085_length_243_cov_0.905882_g21745_i0 PRJNA1113956 22085 243 0.905882 2.20129326 Fusobacterium 848 Bacteria Bacteria 444 3.09e-120   NTclustered gi|2704983719|gb|CP077132.1| 851 g21745 i0 99.588 25 243 1 100 0 1 243 162050 161808 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 6075 444 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
28267948 28267948 PRJNA1113956_P_NODE_3786_length_920_cov_19.113341_g3519_i0 PRJNA1113956 3786 920 19.113341 175.8427372 Fusobacterium periodonticum 860 Bacteria Bacteria 50.4 0.00325   NR WP_204640299.1 860 g3519 i0 28.3 1.26521739130435 145 91 45.7 4 267 686 87 223 WP_204640299.1 cell division protein FtsZ [Fusobacterium periodonticum] diamond 1164 50.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;