RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1113956", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA1113956 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19347925 19347925 PRJNA1113956_P_NODE_22596_length_241_cov_1.833333_g22256_i0 PRJNA1113956 22596 241 1.833333 4.41833253 Spiroplasma sp. TIUS-1 216963 Bacteria Bacteria 56.5 0.002   NTclustered gi|1807235618|gb|CP048387.1| 216963 g22256 i0 92.308 0.161825726141079 39 3 16 0 50 88 340928 340966 Spiroplasma sp. TIUS-1 chromosome, complete genome blastn 39 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. TIUS-1
31964449 31964449 PRJNA1113956_P_NODE_20038_length_250_cov_0.870056_g19698_i0 PRJNA1113956 20038 250 0.870056 2.17514 Tenericutes bacterium HGW-Tenericutes-2 2013845 Bacteria Bacteria 69.7 8.92e-12   NR PKK99766.1 2013845 g19698 i0 42.5 2.904 80 44 93.6 1 247 14 31 110 PKK99766.1 MAG: DNA adenine methylase [Tenericutes bacterium HGW-Tenericutes-2] diamond 726 69.7 1 Bacteria   Bacillati Mycoplasmatota         Tenericutes bacterium HGW-Tenericutes-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;