RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1113956" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA1113956 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28457717 28457717 PRJNA1113956_P_NODE_19146_length_257_cov_2.673913_g18806_i0 PRJNA1113956 19146 257 2.673913 6.87195641 Bryopsis sp. KO-2 3115439 Plants Plants 91.3 6.21e-21   NR GMH39615.1 3041901 g18806 i0 51.2 0.980544747081712 84 40 98.1 1 5 256 4 86 GMH39615.1 hypothetical protein BSKO_07513 [Bryopsis sp. KO-2023] diamond 252 91.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
31331887 31331887 PRJNA1113956_P_NODE_9136_length_475_cov_2.902985_g8797_i0 PRJNA1113956 9136 475 2.902985 13.78917875 Pleodorina starrii 330485 Plants Plants 80.1 4.1e-15   NR GLC37514.1 330485 g8797 i0 37 0.802105263157895 127 78 78.9 1 91 465 76 202 GLC37514.1 hypothetical protein PLESTM_000597400 [Pleodorina starrii] diamond 381 80.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;