RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1113956", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1113956 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1023692 1023692 PRJNA1113956_P_NODE_12181_length_374_cov_8.637874_g11841_i0 PRJNA1113956 12181 374 8.637874 32.30564876 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 691 0   NTclustered gi|1802599797|gb|MT001206.1| 41631 g11841 i0 100 99.1550802139037 374 0 100 0 1 374 509 882 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 37084 691 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
12502602 12502602 PRJNA1113956_P_NODE_13950_length_335_cov_4.503817_g13610_i0 PRJNA1113956 13950 335 4.503817 15.08778695 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 619 6.91e-173   NTclustered gi|89077592|gb|DQ388599.1| 63136 g13610 i0 100 99.5283582089552 335 0 100 0 1 335 14 348 Colpoda steinii strain Sp1 small subunit ribosomal RNA gene, partial sequence blastn 33342 619 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
18073520 18073520 PRJNA1113956_P_NODE_12615_length_364_cov_1.003436_g12275_i0 PRJNA1113956 12615 364 1.003436 3.65250704 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.035   NTclustered gi|145509286|ref|XM_001440550.1| 5888 g12275 i0 100 0.0769230769230769 28 0 8 0 50 77 1433 1406 Paramecium tetraurelia uncharacterized protein (GSPATT00038846001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
27952450 27952450 PRJNA1113956_P_NODE_9505_length_459_cov_3.098446_g9166_i0 PRJNA1113956 9505 459 3.098446 14.22186714 Paramecium primaurelia 5886 SAR_Eukaryotes SAR_Eukaryotes 85.1 1.62e-17   NR CAD8055348.1 5886 g9166 i0 31.7 1.87581699346405 142 97 92.8 0 431 6 23 164 CAD8055348.1 unnamed protein product [Paramecium primaurelia] diamond 861 85.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
29427207 29427207 PRJNA1113956_P_NODE_5709_length_698_cov_2.550400_g5398_i0 PRJNA1113956 5709 698 2.5504 17.801792 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 122 2.16e-29   NR XP_004039384.1 5932 g5398 i0 38.8 11.1275071633238 178 95 72.2 3 619 116 138 311 XP_004039384.1 hypothetical protein IMG5_024510 [Ichthyophthirius multifiliis] diamond 7767 122 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
30099407 30099407 PRJNA1113956_P_NODE_3552_length_958_cov_15.616949_g3295_i0 PRJNA1113956 3552 958 15.616949 149.61037142 Paramecium primaurelia 5886 SAR_Eukaryotes SAR_Eukaryotes 258 2.12e-81   NR CAD8068969.1 5886 g3295 i0 50.2 1.7348643006263 277 130 86.4 4 893 66 2 271 CAD8068969.1 unnamed protein product [Paramecium primaurelia] diamond 1662 258 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
31458613 31458613 PRJNA1113956_P_NODE_6416_length_639_cov_1.526502_g6093_i0 PRJNA1113956 6416 639 1.526502 9.75434778 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 47.4 0.03   NR XP_001018225.2 312017 g6093 i0 29.9 0.690140845070423 147 78 58.7 6 30 404 1146 1289 XP_001018225.2 transmembrane protein, putative [Tetrahymena thermophila SB210] diamond 441 47.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31553565 31553565 PRJNA1113956_P_NODE_21416_length_245_cov_0.895349_g21076_i0 PRJNA1113956 21416 245 0.895349 2.19360505 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 83.2 2.22e-16   NR XP_001013153.2 312017 g21076 i0 72.7 2.69387755102041 55 15 67.3 0 245 81 324 378 XP_001013153.2 kinesin motor catalytic domain protein [Tetrahymena thermophila SB210] diamond 660 83.2 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31901280 31901280 PRJNA1113956_P_NODE_6057_length_666_cov_3.649241_g5736_i0 PRJNA1113956 6057 666 3.649241 24.30394506 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 169 5.49e-49   NR XP_001014252.1 312017 g5736 i0 45.3 0.855855855855856 190 103 85.1 1 97 663 1 190 XP_001014252.1 UMP-CMP kinase [Tetrahymena thermophila SB210] diamond 570 169 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;