RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1112809", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Pisuviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1112809 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27121935 27121935 PRJNA1112809_P_NODE_131282_length_283_cov_1.376190_g128007_i0 PRJNA1112809 131282 283 1.37619 3.8946177 Durnavirales 2732549 Viruses Viruses 89 2.99e-18   NR AWV67005.1 2169481 g128007 i0 60.6 1.37809187279152 66 26 70 0 82 279 5 70 AWV67005.1 RdRp, partial [Lysoka partiti-like virus] diamond 390 89 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Lysoka partiti-like virus
27983887 27983887 PRJNA1112809_P_NODE_76245_length_396_cov_1.368421_g72970_i0 PRJNA1112809 76245 396 1.368421 5.41894716 Melon mild mottle virus 669377 Viruses Viruses 86.3 1.25e-16   NR YP_009507922.1 669377 g72970 i0 36.9 0.984848484848485 130 79 97 2 389 6 348 476 YP_009507922.1 polyprotein [Melon mild mottle virus] diamond 390 86.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus cucumis
28647076 28647076 PRJNA1112809_P_NODE_22907_length_1065_cov_2.915323_g20174_i0 PRJNA1112809 22907 1065 2.915323 31.04818995 Lysoka partiti-like virus 2169481 Viruses Viruses 351 1.22e-114   NR AWV67005.1 2169481 g20174 i0 61.2 1.57746478873239 281 108 79.2 1 222 1064 5 284 AWV67005.1 RdRp, partial [Lysoka partiti-like virus] diamond 1680 351 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Lysoka partiti-like virus
29910125 29910125 PRJNA1112809_P_NODE_36331_length_702_cov_1.616852_g33166_i0 PRJNA1112809 36331 702 1.616852 11.35030104 Potato black ringspot virus 257464 Viruses Viruses 50.8 0.00272   NR AGZ62583.1 257464 g33166 i0 27.6 0.448717948717949 105 76 44.9 0 419 105 582 686 AGZ62583.1 RNA 2 polyprotein [Potato black ringspot virus] diamond 315 50.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus solani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;