RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1112809" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28795778 28795778 PRJNA1112809_P_NODE_30047_length_830_cov_1.961691_g27023_i0 PRJNA1112809 30047 830 1.961691 16.2820353 root 1 Root_unresolved Root_unresolved 64.7 6.41e-9   NR GLD91986.1 114742 g27023 i0 33.1 1.22530120481928 118 79 42.7 0 395 748 16 133 GLD91986.1 hypothetical protein PINS_up000519 [Pythium insidiosum] diamond 1017 64.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
28859003 28859003 PRJNA1112809_P_NODE_175888_length_247_cov_0.885057_g172613_i0 PRJNA1112809 175888 247 0.885057 2.18609079 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 58.9 7.97e-8   NR KAG3012218.1 29920 g172613 i0 84.8 3.60728744939271 33 5 40.1 0 148 246 258 290 KAG3012218.1 hypothetical protein PC119_g12930 [Phytophthora cactorum] diamond 891 58.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;