RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1112809" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28520703 28520703 PRJNA1112809_P_NODE_136107_length_278_cov_1.121951_g132832_i0 PRJNA1112809 136107 278 1.121951 3.11902378 Aphelenchoides avenae 70226 Nematoda Nematoda 50.8 5.55e-5   NR KAH7725499.1 70226 g132832 i0 41.1 0.787769784172662 73 33 68 1 190 2 151 223 KAH7725499.1 spliced leader protein [Aphelenchoides avenae] diamond 219 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
30067831 30067831 PRJNA1112809_P_NODE_165392_length_251_cov_0.865169_g162117_i0 PRJNA1112809 165392 251 0.865169 2.17157419 Diploscapter pachys 2018661 Nematoda Nematoda 70.9 1.87e-12   NR PAV83059.1 2018661 g162117 i0 70.2 0.561752988047809 47 13 56.2 1 110 250 1 46 PAV83059.1 hypothetical protein WR25_02592 [Diploscapter pachys] diamond 141 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;