RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1112809" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28732883 28732883 PRJNA1112809_P_NODE_123547_length_292_cov_1.447489_g120272_i0 PRJNA1112809 123547 292 1.447489 4.22666788 Pseudomonadati 3379134 Bacteria Bacteria 101 2.07e-25   NR MBW7909506.1 2212473 g120272 i0 57.3 2.58904109589041 82 35 84.2 0 252 7 8 89 MBW7909506.1 hypothetical protein [Kiritimatiellia bacterium] diamond 756 102 0.990196078431373 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
32217691 32217691 PRJNA1112809_P_NODE_26818_length_919_cov_2.547281_g23890_i0 PRJNA1112809 26818 919 2.547281 23.40951239 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 92.4 8.95e-19   NR MBP5510689.1 2212473 g23890 i0 51.1 0.29379760609358 90 39 29.1 2 919 653 77 162 MBP5510689.1 DUF1643 domain-containing protein [Kiritimatiellia bacterium] diamond 270 92.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;