RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1112809" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1112809 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12973457 12973457 PRJNA1112809_P_NODE_155731_length_258_cov_1.664865_g152456_i0 PRJNA1112809 155731 258 1.664865 4.2953517 Dendronephthya sp. KE-185 2486122 Cnidaria other_Eukaryota 176 1.34e-39   NTclustered gi|1509780726|gb|MG583531.1| 2486122 g152456 i0 85.227 68.3217054263566 176 21 67 5 85 258 619 791 Dendronephthya sp. KE-185 large subunit ribosomal RNA gene, partial sequence blastn 17627 176 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Nephtheidae Dendronephthya Dendronephthya sp. KE-185
24446033 24446033 PRJNA1112809_P_NODE_176360_length_247_cov_0.885057_g173085_i0 PRJNA1112809 176360 247 0.885057 2.18609079 Anemonia sulcata 6108 Cnidaria other_Eukaryota 52.8 0.022   NTclustered gi|2917940714|emb|OZ237561.1| 6108 g173085 i0 100 0.11336032388664 28 0 11 0 198 225 2797909 2797882 Anemonia sulcata genome assembly, chromosome: 7 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
27722863 27722863 PRJNA1112809_P_NODE_120504_length_296_cov_2.017937_g117229_i0 PRJNA1112809 120504 296 2.017937 5.97309352 Opisthokonta 33154 Cnidaria other_Eukaryota 58.5 1.73e-7   NR CAH3164127.1 104759 g117229 i0 50 2.55405405405405 50 25 50.7 0 43 192 148 197 CAH3164127.1 unnamed protein product, partial [Porites lobata] diamond 756 58.5 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Poritidae Porites Porites lobata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;