RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1112809" and tax_phylum = "Candidatus Bipolaricaulota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Bipolaricaulota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28290617 28290617 PRJNA1112809_P_NODE_191966_length_241_cov_1.690476_g188691_i0 PRJNA1112809 191966 241 1.690476 4.07404716 Pseudomonadati 3379134 Bacteria Bacteria 102 1.02e-25   NR HDL85111.1 2053493 g188691 i0 67.5 6.93360995850622 80 26 99.6 0 240 1 38 117 HDL85111.1 pyridoxal-phosphate dependent enzyme [Candidatus Acetothermia bacterium] diamond 1671 102 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Acetothermia bacterium
30067905 30067905 PRJNA1112809_P_NODE_87512_length_360_cov_2.522648_g84237_i0 PRJNA1112809 87512 360 2.522648 9.0815328 Candidatus Bipolaricaulota bacterium 2306012 Bacteria Bacteria 199 1.5799999999999999e-62   NR MCL6643319.1 2306012 g84237 i0 100 0.825 99 0 82.5 0 2 298 105 203 MCL6643319.1 cytochrome c biogenesis protein CcsA [Candidatus Bipolaricaulota bacterium] diamond 297 199 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium
31047625 31047625 PRJNA1112809_P_NODE_140495_length_273_cov_1.540000_g137220_i0 PRJNA1112809 140495 273 1.54 4.2042 Candidatus Bipolaricaulota bacterium 2306012 Bacteria Bacteria 105 4.73e-25   NR MCD6136029.1 2306012 g137220 i0 73.6 0.956043956043956 87 22 95.6 1 272 12 27 112 MCD6136029.1 PKD domain-containing protein [Candidatus Bipolaricaulota bacterium] diamond 261 105 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;