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contig_metadata

18 rows where bioproject = "PRJNA1112809", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 18 ✖

tax_kingdom 1

  • Pseudomonadati · 18 ✖

bioproject 1

  • PRJNA1112809 · 18 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11226668 11226668 PRJNA1112809_P_NODE_164649_length_251_cov_0.865169_g161374_i0 PRJNA1112809 164649 251 0.865169 2.17157419 Bdellovibrio 958 Bacteria Bacteria 182 2.78e-41   NTclustered gi|2801803968|gb|CP169237.1| 959 g161374 i0 79.921 2.02390438247012 254 45 100 5 1 251 3316080 3315830 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 508 182 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12973816 12973816 PRJNA1112809_P_NODE_177651_length_246_cov_1.427746_g174376_i0 PRJNA1112809 177651 246 1.427746 3.51225516 Bdellovibrionota 3018035 Bacteria Bacteria 98.2 1.05e-21   NR WP_102244205.1 960 g174376 i0 69.9 1.78048780487805 73 22 89 0 246 28 43 115 WP_102244205.1 HAMP domain-containing methyl-accepting chemotaxis protein [Bacteriovorax stolpii] diamond 438 98.6 0.995943204868154 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
19347726 19347726 PRJNA1112809_P_NODE_96976_length_337_cov_2.424242_g93701_i0 PRJNA1112809 96976 337 2.424242 8.16969554 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 76.8 1.89e-9   NTclustered gi|2621706492|emb|OY764265.1| 3034175 g93701 i0 94 1.08308605341246 50 3 15 0 136 185 1805896 1805847 MAG: Bdellovibrionota bacterium isolate efddfb02-ff0c-4ac5-ae96-c61d995422a3 genome assembly, chromosome: 1 blastn 365 76.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
23174003 23174003 PRJNA1112809_P_NODE_91899_length_349_cov_1.938406_g88624_i0 PRJNA1112809 91899 349 1.938406 6.76503694 Pseudomonadati 3379134 Bacteria Bacteria 206 3.1e-64   NR OYZ23593.1 1970323 g88624 i0 84.5 1.99426934097421 116 18 99.7 0 348 1 42 157 OYZ23593.1 MAG: hypothetical protein B7Y39_04440 [Bdellovibrio sp. 28-41-41] diamond 696 207 0.995169082125604 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
27700044 27700044 PRJNA1112809_P_NODE_149344_length_264_cov_1.607330_g146069_i0 PRJNA1112809 149344 264 1.60733 4.2433512 Bdellovibrionales bacterium RIFOXYD1_FULL_55_31 1797404 Bacteria Bacteria 74.7 2.78e-13   NR OFZ85158.1 1797404 g146069 i0 46.2 1.98863636363636 91 44 97.7 1 261 4 145 235 OFZ85158.1 MAG: hypothetical protein A2603_06300 [Bdellovibrionales bacterium RIFOXYD1_FULL_55_31] diamond 525 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_55_31
27785801 27785801 PRJNA1112809_P_NODE_193144_length_241_cov_0.916667_g189869_i0 PRJNA1112809 193144 241 0.916667 2.20916747 Micavibrio 213485 Bacteria Bacteria 148 4.769999999999998e-41   NR MBI2234646.1 349221 g189869 i0 82.3 1.96680497925311 79 14 98.3 0 3 239 117 195 MBI2234646.1 phosphoserine transaminase [Micavibrio aeruginosavorus] diamond 474 148 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
27975026 27975026 PRJNA1112809_P_NODE_80165_length_382_cov_2.213592_g76890_i0 PRJNA1112809 80165 382 2.213592 8.45592144 Bacteria 2 Bacteria Bacteria 185 2.2699999999999997e-55   NR MBS1984054.1 2053517 g76890 i0 77.2 1.99476439790576 127 29 99.7 0 1 381 40 166 MBS1984054.1 tyrosine-type recombinase/integrase [Bdellovibrionales bacterium] diamond 762 186 0.99462365591397806 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28299578 28299578 PRJNA1112809_P_NODE_199406_length_227_cov_4.519481_g196131_i0 PRJNA1112809 199406 227 4.519481 10.25922187 Bdellovibrio sp. ArHS 1569284 Bacteria Bacteria 94.4 1.83e-20   NR WP_041871773.1 1569284 g196131 i0 65.3 0.991189427312775 75 26 99.1 0 3 227 78 152 WP_041871773.1 hypothetical protein [Bdellovibrio sp. ArHS] diamond 225 94.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
29435936 29435936 PRJNA1112809_P_NODE_113730_length_306_cov_2.643777_g110455_i0 PRJNA1112809 113730 306 2.643777 8.08995762 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 89.4 1.44e-19   NR MFL5812612.1 3034169 g110455 i0 60.6 0.696078431372549 71 26 67.6 1 208 2 76 146 MFL5812612.1 plastocyanin/azurin family copper-binding protein [Bdellovibrionia bacterium] diamond 213 89.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
29941677 29941677 PRJNA1112809_P_NODE_161311_length_253_cov_1.488889_g158036_i0 PRJNA1112809 161311 253 1.488889 3.76688917 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 94 1.21e-21   NR WP_295904741.1 239744 g158036 i0 72.1 0.723320158102767 61 17 72.3 0 251 69 147 207 WP_295904741.1 hypothetical protein [uncultured Bdellovibrio sp.] diamond 183 94 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
30352783 30352783 PRJNA1112809_P_NODE_132952_length_281_cov_1.480769_g129677_i0 PRJNA1112809 132952 281 1.480769 4.16096089 Bdellovibrio 958 Bacteria Bacteria 181 1.54e-53   NR WP_374078843.1 958 g129677 i0 94.6 2.97864768683274 93 5 99.3 0 280 2 248 340 WP_374078843.1 MULTISPECIES: S1 RNA-binding domain-containing protein [Bdellovibrio] diamond 837 181 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
30510231 30510231 PRJNA1112809_P_NODE_46853_length_569_cov_1.733871_g43602_i0 PRJNA1112809 46853 569 1.733871 9.86572599 Silvanigrella sp. 2024976 Bacteria Bacteria 191 9.17e-58   NR WP_397601174.1 2024976 g43602 i0 53.8 0.901581722319859 171 78 89.6 1 47 556 13 183 WP_397601174.1 hexitol phosphatase HxpB [Silvanigrella sp.] diamond 513 191 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella sp.
30889438 30889438 PRJNA1112809_P_NODE_169934_length_249_cov_0.875000_g166659_i0 PRJNA1112809 169934 249 0.875 2.17875 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 133 5.28e-34   NR PZQ47721.1 349221 g166659 i0 76.9 0.939759036144578 78 18 94 0 2 235 425 502 PZQ47721.1 MAG: hypothetical protein DI551_02865 [Micavibrio aeruginosavorus] diamond 234 133 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
31426699 31426699 PRJNA1112809_P_NODE_188816_length_242_cov_1.822485_g185541_i0 PRJNA1112809 188816 242 1.822485 4.4104137 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 95.9 6.360000000000001e-21   NR WP_295904633.1 239744 g185541 i0 82.5 0.78099173553719 63 11 78.1 0 52 240 1 63 WP_295904633.1 methyl-accepting chemotaxis protein [uncultured Bdellovibrio sp.] diamond 189 95.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
31521749 31521749 PRJNA1112809_P_NODE_135016_length_279_cov_1.334951_g131741_i0 PRJNA1112809 135016 279 1.334951 3.72451329 Bdellovibrionales bacterium RIFOXYD1_FULL_55_31 1797404 Bacteria Bacteria 110 1.2e-25   NR OFZ85158.1 1797404 g131741 i0 66.3 2.96774193548387 92 27 98.9 1 2 277 675 762 OFZ85158.1 MAG: hypothetical protein A2603_06300 [Bdellovibrionales bacterium RIFOXYD1_FULL_55_31] diamond 828 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_55_31
31742875 31742875 PRJNA1112809_P_NODE_131357_length_283_cov_1.247619_g128082_i0 PRJNA1112809 131357 283 1.247619 3.53076177 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 127 1.23e-31   NR PZP54292.1 349221 g128082 i0 70.5 1.00706713780919 95 27 99.6 1 283 2 513 607 PZP54292.1 MAG: type II and III secretion system family protein [Micavibrio aeruginosavorus] diamond 285 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
32217649 32217649 PRJNA1112809_P_NODE_153338_length_260_cov_1.935829_g150063_i0 PRJNA1112809 153338 260 1.935829 5.0331554 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 74.3 3.41e-13   NR MBT3585768.1 2026745 g150063 i0 44.2 1.85769230769231 86 46 99.2 1 2 259 408 491 MBT3585768.1 DUF3404 domain-containing protein [Halobacteriovoraceae bacterium] diamond 483 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
32565946 32565946 PRJNA1112809_P_NODE_195539_length_237_cov_2.792683_g192264_i0 PRJNA1112809 195539 237 2.792683 6.61865871 Micavibrio sp. 2024841 Bacteria Bacteria 113 2.4899999999999996e-29   NR MDB5492475.1 2024841 g192264 i0 68.8 0.974683544303797 77 24 97.5 0 236 6 23 99 MDB5492475.1 hypothetical protein [Micavibrio sp.] diamond 231 113 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;