RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1112809", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1112809 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6126549 6126549 PRJNA1112809_P_NODE_74625_length_401_cov_3.701220_g71350_i0 PRJNA1112809 74625 401 3.70122 14.8418922 Mycoplasma 2093 Bacteria Bacteria 309 2.07e-79   NTclustered gi|323461213|emb|FR799654.1| 167967 g71350 i0 92.558 65.1770573566085 215 16 54 0 167 381 69 283 Uncultured Mycoplasma sp. partial 16S rRNA gene, clone LX1-01 blastn 26136 309 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
20149714 20149714 PRJNA1112809_P_NODE_161416_length_253_cov_1.316667_g158141_i0 PRJNA1112809 161416 253 1.316667 3.33116751 FCB group 1783270 Bacteria Bacteria 462 8.95e-126   NTclustered gi|1720621726|gb|CP035041.1| 2100 g158141 i0 99.605 99.5375494071146 253 1 100 0 1 253 428795 429047 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 25183 462 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20620679 20620679 PRJNA1112809_P_NODE_154617_length_259_cov_1.655914_g151342_i0 PRJNA1112809 154617 259 1.655914 4.28881726 Mycoplasmopsis cynos 171284 Bacteria Bacteria 446 9.26e-121   NTclustered gi|2303515627|gb|CP103992.1| 171284 g151342 i0 97.692 21.0810810810811 260 5 100 1 1 259 75590 75331 Mycoplasmopsis cynos strain 16-078726-2 chromosome blastn 5460 446 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;