contig_metadata
9 rows where bioproject = "PRJNA1112809", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9951455 | 9951455 | PRJNA1112809_P_NODE_157108_length_257_cov_1.255435_g153833_i0 | PRJNA1112809 | 157108 | 257 | 1.255435 | 3.22646795 | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | 2013741 | Bacteria | Bacteria | 100 | 1.58e-22 | NR | PKN58351.1 | 2013741 | g153833 | i0 | 59.3 | 1.98443579766537 | 86 | 34 | 99.2 | 1 | 1 | 255 | 365 | 450 | PKN58351.1 MAG: hypothetical protein CVU56_06235 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] | diamond | 510 | 100 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | ||||||
| 15522026 | 15522026 | PRJNA1112809_P_NODE_143293_length_270_cov_1.563452_g140018_i0 | PRJNA1112809 | 143293 | 270 | 1.563452 | 4.2213204 | uncultured delta proteobacterium | 34034 | Bacteria | Bacteria | 99 | 3.13e-16 | NTclustered | gi|2874253659|emb|OY969087.1| | 34034 | g140018 | i0 | 85.87 | 14.3 | 92 | 13 | 34 | 0 | 8 | 99 | 1167888 | 1167979 | MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 | blastn | 3861 | 99 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 27384074 | 27384074 | PRJNA1112809_P_NODE_156563_length_257_cov_2.097826_g153288_i0 | PRJNA1112809 | 156563 | 257 | 2.097826 | 5.39141282 | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | 2013741 | Bacteria | Bacteria | 120 | 7.039999999999999e-32 | NR | PKN55915.1 | 2013741 | g153288 | i0 | 73.5 | 0.968871595330739 | 83 | 22 | 96.9 | 0 | 251 | 3 | 44 | 126 | PKN55915.1 MAG: hypothetical protein CVU56_18760 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] | diamond | 249 | 120 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | ||||||
| 28133025 | 28133025 | PRJNA1112809_P_NODE_120485_length_296_cov_2.067265_g117210_i0 | PRJNA1112809 | 120485 | 296 | 2.067265 | 6.1191044 | Bacteria | 2 | Bacteria | Bacteria | 96.3 | 1.9e-21 | NR | PKN49686.1 | 2013748 | g117210 | i0 | 66.7 | 4.36824324324324 | 72 | 24 | 73 | 0 | 4 | 219 | 241 | 312 | PKN49686.1 MAG: magnesium chelatase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] | diamond | 1293 | 96.3 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20 | ||||||
| 29183852 | 29183852 | PRJNA1112809_P_NODE_140349_length_273_cov_1.770000_g137074_i0 | PRJNA1112809 | 140349 | 273 | 1.77 | 4.8321 | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 | 2013747 | Bacteria | Bacteria | 48.5 | 2.98e-4 | NR | PKN39646.1 | 2013748 | g137074 | i0 | 35.1 | 1.62637362637363 | 77 | 48 | 84.6 | 1 | 20 | 250 | 126 | 200 | PKN39646.1 MAG: hypothetical protein CVU63_14935 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] | diamond | 444 | 48.5 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20 | ||||||
| 29215476 | 29215476 | PRJNA1112809_P_NODE_162449_length_252_cov_1.363128_g159174_i0 | PRJNA1112809 | 162449 | 252 | 1.363128 | 3.43508256 | Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 | 1797895 | Bacteria | Bacteria | 50.8 | 5.26e-5 | NR | OGQ77307.1 | 1797895 | g159174 | i0 | 33.8 | 1.83333333333333 | 80 | 53 | 95.2 | 0 | 251 | 12 | 181 | 260 | OGQ77307.1 MAG: hypothetical protein A2289_00095 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] | diamond | 462 | 50.8 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 | ||||||
| 29490450 | 29490450 | PRJNA1112809_P_NODE_136730_length_277_cov_1.490196_g133455_i0 | PRJNA1112809 | 136730 | 277 | 1.490196 | 4.12784292 | delta/epsilon subdivisions | 68525 | Bacteria | Bacteria | 45.8 | 0.00405 | NR | OGQ83952.1 | 1797894 | g133455 | i0 | 48.2 | 3.89891696750903 | 56 | 27 | 58.5 | 1 | 28 | 189 | 205 | 260 | OGQ83952.1 MAG: biotin--[acetyl-CoA-carboxylase] ligase [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19] | diamond | 1080 | 46.2 | 0.991341991341991 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 | ||||||
| 32691512 | 32691512 | PRJNA1112809_P_NODE_198800_length_229_cov_2.474359_g195525_i0 | PRJNA1112809 | 198800 | 229 | 2.474359 | 5.66628211 | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 | 2013747 | Bacteria | Bacteria | 85.9 | 1.81e-17 | NR | PKN50070.1 | 2013748 | g195525 | i0 | 55.3 | 0.995633187772926 | 76 | 34 | 99.6 | 0 | 2 | 229 | 88 | 163 | PKN50070.1 MAG: hypothetical protein CVU63_00360 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] | diamond | 228 | 85.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20 | ||||||
| 32754563 | 32754563 | PRJNA1112809_P_NODE_156260_length_258_cov_0.718919_g152985_i0 | PRJNA1112809 | 156260 | 258 | 0.718919 | 1.85481102 | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 | 2013747 | Bacteria | Bacteria | 135 | 1.2599999999999999e-34 | NR | PKN49034.1 | 2013748 | g152985 | i0 | 70.2 | 0.976744186046512 | 84 | 25 | 97.7 | 0 | 5 | 256 | 221 | 304 | PKN49034.1 MAG: hypothetical protein CVU63_03280 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] | diamond | 252 | 135 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;