RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1112809", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1112809 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4046224 4046224 PRJNA1112809_P_NODE_143564_length_270_cov_1.208122_g140289_i0 PRJNA1112809 143564 270 1.208122 3.2619294 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 374 4.6499999999999986e-99   NTclustered gi|2874253811|emb|OY969795.1| 464461 g140289 i0 91.636 118.651851851852 275 15 100 5 1 270 654392 654121 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 32036 374 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
23172654 23172654 PRJNA1112809_P_NODE_200439_length_222_cov_4.543624_g197164_i0 PRJNA1112809 200439 222 4.543624 10.08684528 Candidatus Fritschea bemisiae 206681 Bacteria Bacteria 82.4 2.51e-11   NTclustered gi|31747861|gb|AY140910.1| 206681 g197164 i0 79.167 5.91891891891892 120 23 53 2 66 183 6821 6702 Candidatus Fritschea bemisiae strain Falk YaeL (yaeL) gene, partial cds; putative glycosylhydrolase and putative transposase genes, complete cds; 16S ribosomal RNA and 23S ribosomal RNA genes, complete sequence; putative endonuclease gene, complete cds; 5S ribosomal RNA gene, complete sequence; argynyl tRNA synthetase (argS), YjeE (yjeE), probable GTP-binding protein, DNA polymerase III epsilon subunit, and phosphoglycerate kinase (pgk) genes, complete cds; and unknown gene blastn 1314 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Fritschea Candidatus Fritschea bemisiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;